Information for 5-CAGTGAAGCT (Motif 19)

T G A C C T G A C A T G C A G T A T C G T C G A T C G A C A T G T A G C G A C T
Reverse Opposite:
C T G A A T C G G T A C A G C T A G C T T A G C G T C A G T A C G A C T A C T G
p-value:1e-10
log p-value:-2.332e+01
Information Content per bp:1.532
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif3.56%
Number of Background Sequences with motif336.6
Percentage of Background Sequences with motif0.70%
Average Position of motif in Targets54.1 +/- 26.5bp
Average Position of motif in Background50.3 +/- 29.8bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer

Match Rank:1
Score:0.65
Offset:-6
Orientation:forward strand
Alignment:------CAGTGAAGCT----
NGTGTTCAVTSAAGCGKAAA
 A C G T A C G T A C G T A C G T A C G T A C G T T G A C C T G A C A T G C A G T A T C G T C G A T C G A C A T G T A G C G A C T A C G T A C G T A C G T A C G T
A G C T T A C G C G A T T C A G A G C T A C G T G A T C C T G A T A G C A G C T A T G C C T G A C G T A A T C G A G T C C T A G A C T G C T G A G T C A T C G A

POL008.1_DCE_S_I/Jaspar

Match Rank:2
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:CAGTGAAGCT
---NGAAGC-
 T G A C C T G A C A T G C A G T A T C G T C G A T C G A C A T G T A G C G A C T
A C G T A C G T A C G T T A C G T A C G T G C A T C G A T A C G T G A C A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:3
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CAGTGAAGCT----
SCAGYCADGCATGAC
 A C G T T G A C C T G A C A T G C A G T A T C G T C G A T C G A C A T G T A G C G A C T A C G T A C G T A C G T A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

PB0005.1_Bbx_1/Jaspar

Match Rank:4
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----CAGTGAAGCT
TAATTCAATGAAGTG
 A C G T A C G T A C G T A C G T A C G T T G A C C T G A C A T G C A G T A T C G T C G A T C G A C A T G T A G C G A C T
G C A T G C T A C T G A C G A T C G A T T G A C G C T A C G T A C G A T A C T G C G T A G C T A A T C G G C A T C T A G

PB0195.1_Zbtb3_2/Jaspar

Match Rank:5
Score:0.60
Offset:-7
Orientation:reverse strand
Alignment:-------CAGTGAAGCT
NNNNTGCCAGTGATTG-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C C T G A C A T G C A G T A T C G T C G A T C G A C A T G T A G C G A C T
G C T A G C A T C G A T G A T C G A C T T C A G T G A C T A G C C G T A A C T G A G C T C A T G C G T A A G C T C G A T T C A G A C G T

PB0091.1_Zbtb3_1/Jaspar

Match Rank:6
Score:0.60
Offset:-7
Orientation:reverse strand
Alignment:-------CAGTGAAGCT
NNNANTGCAGTGCNNTT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C C T G A C A T G C A G T A T C G T C G A T C G A C A T G T A G C G A C T
T G A C T A C G T A C G T G C A T C G A A C G T T A C G G T A C C G T A A T C G A G C T C A T G T A G C T A C G T C G A G A C T G A C T

Pax6/MA0069.1/Jaspar

Match Rank:7
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CAGTGAAGCT----
AANTCATGCGTGAA
 T G A C C T G A C A T G C A G T A T C G T C G A T C G A C A T G T A G C G A C T A C G T A C G T A C G T A C G T
G T C A T C G A A G T C G A C T A T G C C T G A C G A T A T C G G A T C C T A G A C G T C T A G C G T A T C G A

PAX5/MA0014.2/Jaspar

Match Rank:8
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----CAGTGAAGCT----
GAGGGCAGCCAAGCGTGAC
 A C G T A C G T A C G T A C G T A C G T T G A C C T G A C A T G C A G T A T C G T C G A T C G A C A T G T A G C G A C T A C G T A C G T A C G T A C G T
T C A G C G T A T C A G C T A G A C T G G A T C C T G A T A C G A G T C T A G C T C G A C T G A A T C G A G T C C T A G C A G T C T A G C T G A G T A C

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CAGTGAAGCT-----
GCAGCCAAGCGTGACN
 A C G T T G A C C T G A C A T G C A G T A T C G T C G A T C G A C A T G T A G C G A C T A C G T A C G T A C G T A C G T A C G T
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CAGTGAAGCT
CGGAAGTGAAAC-
 A C G T A C G T A C G T T G A C C T G A C A T G C A G T A T C G T C G A T C G A C A T G T A G C G A C T
T G A C C T A G T C A G G T C A C G T A T C A G C G A T T C A G T C G A T G C A C T G A T A G C A C G T