Information for 10-GCACGCCTGATTG (Motif 5)

A C T G A G T C T C G A A G T C A C T G A G T C A G T C A C G T C T A G C G T A G C A T A C G T A C T G
Reverse Opposite:
A G T C C G T A C G T A A C G T A G T C C G T A A C T G C T A G A G T C C T A G A G C T C T A G A G T C
p-value:1e-21
log p-value:-4.874e+01
Information Content per bp:1.840
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.26%
Number of Background Sequences with motif4.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets46.8 +/- 24.8bp
Average Position of motif in Background57.8 +/- 9.3bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Dux/MA0611.1/Jaspar

Match Rank:1
Score:0.67
Offset:6
Orientation:reverse strand
Alignment:GCACGCCTGATTG-
------TTGATTGN
 A C T G A G T C T C G A A G T C A C T G A G T C A G T C A C G T C T A G C G T A G C A T A C G T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T A C G T A C T G C G T A A C G T A C G T C T A G A T C G

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GCACGCCTGATTG-
GTCATGCHTGRCTGS
 A C G T A C T G A G T C T C G A A G T C A C T G A G T C A G T C A C G T C T A G C G T A G C A T A C G T A C T G A C G T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

NFYB/MA0502.1/Jaspar

Match Rank:3
Score:0.64
Offset:6
Orientation:reverse strand
Alignment:GCACGCCTGATTG--------
------CTGATTGGTCNATTT
 A C T G A G T C T C G A A G T C A C T G A G T C A G T C A C G T C T A G C G T A G C A T A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G C T A T C G C G T A A G C T A C G T A C T G A C T G G A C T A G T C T A G C T C G A C A G T C A G T A G C T

EN2/MA0642.1/Jaspar

Match Rank:4
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:GCACGCCTGATTG--
-----GNTAATTGGN
 A C T G A G T C T C G A A G T C A C T G A G T C A G T C A C G T C T A G C G T A G C A T A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A C G A T G C A G C T T C G A C G T A A C G T A C G T T C A G T A C G A T C G

PAX9/MA0781.1/Jaspar

Match Rank:5
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GCACGCCTGATTG--
CGTCACGCATGACTGCA
 A C G T A C G T A C T G A G T C T C G A A G T C A C T G A G T C A G T C A C G T C T A G C G T A G C A T A C G T A C T G A C G T A C G T
A T G C A C T G G C A T A G T C T G C A A G T C A C T G A T G C G C T A G A C T A T C G C T G A T A G C G A C T C A T G T G A C G T C A

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:6
Score:0.61
Offset:6
Orientation:forward strand
Alignment:GCACGCCTGATTG-
------CTAATKGV
 A C T G A G T C T C G A A G T C A C T G A G T C A G T C A C G T C T A G C G T A G C A T A C G T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C

EN1/MA0027.2/Jaspar

Match Rank:7
Score:0.60
Offset:6
Orientation:reverse strand
Alignment:GCACGCCTGATTG-
------CTAATTAG
 A C T G A G T C T C G A A G T C A C T G A G T C A G T C A C G T C T A G C G T A G C A T A C G T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C G C A T T C G A C G T A A C G T A C G T C T G A T A C G

MSX1/MA0666.1/Jaspar

Match Rank:8
Score:0.60
Offset:6
Orientation:reverse strand
Alignment:GCACGCCTGATTG-
------NTAATTGG
 A C T G A G T C T C G A A G T C A C T G A G T C A G T C A C G T C T A G C G T A G C A T A C G T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T T G C A G T C A A C G T A C G T C T A G T A C G

Msx3/MA0709.1/Jaspar

Match Rank:9
Score:0.60
Offset:6
Orientation:reverse strand
Alignment:GCACGCCTGATTG-
------NTAATTGN
 A C T G A G T C T C G A A G T C A C T G A G T C A G T C A C G T C T A G C G T A G C A T A C G T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T G C A T C T G A C G T A A C G T A G C T C T A G A T C G

MSX2/MA0708.1/Jaspar

Match Rank:10
Score:0.60
Offset:6
Orientation:reverse strand
Alignment:GCACGCCTGATTG-
------NTAATTGG
 A C T G A G T C T C G A A G T C A C T G A G T C A G T C A C G T C T A G C G T A G C A T A C G T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T C A G T T C G A C G T A A C G T C A G T C T A G A T C G