Information for 9-CTCTAAGSWCAGT (Motif 9)

A G T C A C G T A G T C A G C T C G T A C T G A A C T G A T C G C G A T A G T C C G T A A C T G A G C T
Reverse Opposite:
C T G A A G T C A C G T A C T G C G T A A T G C A G T C A G C T A C G T C T G A A C T G C G T A A C T G
p-value:1e-10
log p-value:-2.488e+01
Information Content per bp:1.911
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.58%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets52.4 +/- 22.3bp
Average Position of motif in Background71.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.67
Offset:2
Orientation:forward strand
Alignment:CTCTAAGSWCAGT
--CAAAGGTCAG-
 A G T C A C G T A G T C A G C T C G T A C T G A A C T G A T C G C G A T A G T C C G T A A C T G A G C T
A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.62
Offset:3
Orientation:forward strand
Alignment:CTCTAAGSWCAGT
---TRAGGTCA--
 A G T C A C G T A G T C A G C T C G T A C T G A A C T G A T C G C G A T A G T C C G T A A C T G A G C T
A C G T A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:3
Score:0.60
Offset:4
Orientation:forward strand
Alignment:CTCTAAGSWCAGT
----AAGGTCAC-
 A G T C A C G T A G T C A G C T C G T A C T G A A C T G A T C G C G A T A G T C C G T A A C T G A G C T
A C G T A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T

Rxra/MA0512.2/Jaspar

Match Rank:4
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CTCTAAGSWCAGT
GGGGTCAAAGGTCA--
 A C G T A C G T A C G T A G T C A C G T A G T C A G C T C G T A C T G A A C T G A T C G C G A T A G T C C G T A A C T G A G C T
T C A G T C A G C A T G C A T G A C G T A G T C T C G A C T G A T C G A A T C G A C T G A C G T A G T C T C G A A C G T A C G T

RXRB/MA0855.1/Jaspar

Match Rank:5
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CTCTAAGSWCAGT
GGGGTCAAAGGTCA--
 A C G T A C G T A C G T A G T C A C G T A G T C A G C T C G T A C T G A A C T G A T C G C G A T A G T C C G T A A C T G A G C T
T C A G T C A G C T A G C A T G A C G T A G T C C T G A C T G A T C G A C A T G C A T G A C G T A G T C T C G A A C G T A C G T

RXRG/MA0856.1/Jaspar

Match Rank:6
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CTCTAAGSWCAGT
GGGGTCAAAGGTCA--
 A C G T A C G T A C G T A G T C A C G T A G T C A G C T C G T A C T G A A C T G A T C G C G A T A G T C C G T A A C T G A G C T
T C A G T C A G C A T G C A T G A C G T A G T C C T G A C T G A C T G A C A T G C A T G A C G T A G T C T C G A A C G T A C G T

Nr2f6/MA0677.1/Jaspar

Match Rank:7
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CTCTAAGSWCAGT
GAGGTCAAAGGTCA--
 A C G T A C G T A C G T A G T C A C G T A G T C A G C T C G T A C T G A A C T G A T C G C G A T A G T C C G T A A C T G A G C T
T C A G T C G A C A T G C A T G A C G T A G T C C G T A C T G A T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CTCTAAGSWCAGT
--TCAAGGTCAN-
 A G T C A C G T A G T C A G C T C G T A C T G A A C T G A T C G C G A T A G T C C G T A A C T G A G C T
A C G T A C G T A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:9
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CTCTAAGSWCAGT
-BTCAAGGTCA--
 A G T C A C G T A G T C A G C T C G T A C T G A A C T G A T C G C G A T A G T C C G T A A C T G A G C T
A C G T A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:10
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CTCTAAGSWCAGT--
TCTCAAAGGTCACCTG
 A C G T A G T C A C G T A G T C A G C T C G T A C T G A A C T G A T C G C G A T A G T C C G T A A C T G A G C T A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G