Information for 2-CBGCTGGCAGCTT (Motif 3)

A T G C A C T G A C T G A G T C A C G T A C T G A T C G A G T C C G T A A T C G A G T C A C G T A G C T
Reverse Opposite:
C T G A G T C A A C T G A T G C A C G T A C T G A T G C A G T C C G T A A C T G A G T C T G A C A T C G
p-value:1e-14
log p-value:-3.270e+01
Information Content per bp:1.827
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.15%
Number of Background Sequences with motif8.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets56.3 +/- 16.5bp
Average Position of motif in Background36.0 +/- 19.2bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:1
Score:0.71
Offset:1
Orientation:forward strand
Alignment:CBGCTGGCAGCTT
-VGCTGWCAVB--
 A T G C A C T G A C T G A G T C A C G T A C T G A T C G A G T C C G T A A T C G A G T C A C G T A G C T
A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:CBGCTGGCAGCTT
--CTTGGCAA---
 A T G C A C T G A C T G A G T C A C G T A C T G A T C G A G T C C G T A A T C G A G T C A C G T A G C T
A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:3
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CBGCTGGCAGCTT
-GGTTGGCAT---
 A T G C A C T G A C T G A G T C A C G T A C T G A T C G A G T C C G T A A T C G A G T C A C G T A G C T
A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:4
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CBGCTGGCAGCTT
GGTGYTGACAGS--
 A C G T A T G C A C T G A C T G A G T C A C G T A C T G A T C G A G T C C G T A A T C G A G T C A C G T A G C T
T C A G A T C G G A C T A C T G G A C T C A G T C T A G C G T A G T A C C G T A C T A G A T C G A C G T A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:5
Score:0.64
Offset:4
Orientation:forward strand
Alignment:CBGCTGGCAGCTT
----TGTCANYT-
 A T G C A C T G A C T G A G T C A C G T A C T G A T C G A G T C C G T A A T C G A G T C A C G T A G C T
A C G T A C G T A C G T A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T A C G T

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:6
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:CBGCTGGCAGCTT
----TGACACCT-
 A T G C A C T G A C T G A G T C A C G T A C T G A T C G A G T C C G T A A T C G A G T C A C G T A G C T
A C G T A C G T A C G T A C G T G A C T T C A G C T G A A G T C C T G A T A G C G A T C G A C T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CBGCTGGCAGCTT
--NTTGGCANN--
 A T G C A C T G A C T G A G T C A C G T A C T G A T C G A G T C C G T A A T C G A G T C A C G T A G C T
A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:8
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CBGCTGGCAGCTT
NGTAGGTTGGCATNNN
 A C G T A C G T A C G T A T G C A C T G A C T G A G T C A C G T A C T G A T C G A G T C C G T A A T C G A G T C A C G T A G C T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

YY1(Zf)/Promoter/Homer

Match Rank:9
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CBGCTGGCAGCTT-
--GCCGCCATCTTG
 A T G C A C T G A C T G A G T C A C G T A C T G A T C G A G T C C G T A A T C G A G T C A C G T A G C T A C G T
A C G T A C G T C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G

MEIS2/MA0774.1/Jaspar

Match Rank:10
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CBGCTGGCAGCTT
--GCTGTCAA---
 A T G C A C T G A C T G A G T C A C G T A C T G A T C G A G T C C G T A A T C G A G T C A C G T A G C T
A C G T A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T A C G T