Information for 12-GYCRRAAACA (Motif 16)

A C T G A G C T A T G C C T A G C T A G C G T A G T C A T C G A G T A C C G T A
Reverse Opposite:
A C G T A C T G A G C T C A G T C G A T G A T C A G T C A T C G C T G A A G T C
p-value:1e-8
log p-value:-2.058e+01
Information Content per bp:1.701
Number of Target Sequences with motif39.0
Percentage of Target Sequences with motif4.20%
Number of Background Sequences with motif630.7
Percentage of Background Sequences with motif1.35%
Average Position of motif in Targets46.6 +/- 27.9bp
Average Position of motif in Background52.5 +/- 30.4bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0076.1_Hoxd11/Jaspar

Match Rank:1
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GYCRRAAACA---
TAAGGTCGTAAAATCCT
 A C G T A C G T A C G T A C G T A C T G A G C T A T G C C T A G C T A G C G T A G T C A T C G A G T A C C G T A A C G T A C G T A C G T
G A C T G C T A C T G A T C A G T C A G A G C T G A T C C T A G A C G T C G T A C G T A G C T A G C T A G C A T G A T C G A T C C A G T

PH0065.1_Hoxc10/Jaspar

Match Rank:2
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----GYCRRAAACA--
TAAAGTCGTAAAACGT
 A C G T A C G T A C G T A C G T A C T G A G C T A T G C C T A G C T A G C G T A G T C A T C G A G T A C C G T A A C G T A C G T
G A C T C G T A C G T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C A T C G A C G T

HOXD12/MA0873.1/Jaspar

Match Rank:3
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GYCRRAAACA
AGTCGTAAAAA
 A C G T A C T G A G C T A T G C C T A G C T A G C G T A G T C A T C G A G T A C C G T A
T C G A T C A G A G C T T A G C T C A G G A C T C G T A C T G A C G T A G C T A G T C A

PH0066.1_Hoxc11/Jaspar

Match Rank:4
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----GYCRRAAACA--
TAAAGTCGTAAAATAG
 A C G T A C G T A C G T A C G T A C T G A G C T A T G C C T A G C T A G C G T A G T C A T C G A G T A C C G T A A C G T A C G T
G A C T C T G A C G T A C T G A T C A G A G C T G A T C C T A G A C G T C G T A C G T A C G T A G C T A G A C T C T G A C A T G

PH0067.1_Hoxc12/Jaspar

Match Rank:5
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----GYCRRAAACA---
TTAGGTCGTAAAATTTC
 A C G T A C G T A C G T A C G T A C T G A G C T A T G C C T A G C T A G C G T A G T C A T C G A G T A C C G T A A C G T A C G T A C G T
G A C T G C A T T C G A T C A G T C A G A G C T G T A C C T A G A C G T G C T A C G T A G C T A G C T A G C A T A G C T C G A T G A T C

PB0186.1_Tcf3_2/Jaspar

Match Rank:6
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GYCRRAAACA----
AGCCGAAAAAAAAAT
 A C G T A C T G A G C T A T G C C T A G C T A G C G T A G T C A T C G A G T A C C G T A A C G T A C G T A C G T A C G T
C T G A T A C G A T G C T A G C A C T G C G T A C T G A G C T A G C T A G C T A T G C A G C T A T C G A G C T A G C A T

HOXC12/MA0906.1/Jaspar

Match Rank:7
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GYCRRAAACA
GGTCGTAAAAA
 A C G T A C T G A G C T A T G C C T A G C T A G C G T A G T C A T C G A G T A C C G T A
C T A G T C A G G A C T G T A C T C A G A G C T G C T A C G T A G C T A G T C A G C T A

HOXD11/MA0908.1/Jaspar

Match Rank:8
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GYCRRAAACA
GTCGTAAAAA
 A C T G A G C T A T G C C T A G C T A G C G T A G T C A T C G A G T A C C G T A
T C A G A C G T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C T A

PH0047.1_Hoxa11/Jaspar

Match Rank:9
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----GYCRRAAACA--
TAAAGTCGTAAAACAT
 A C G T A C G T A C G T A C G T A C T G A G C T A T G C C T A G C T A G C G T A G T C A T C G A G T A C C G T A A C G T A C G T
G C A T C T G A G C T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C C T G A A C G T

HOXC10/MA0905.1/Jaspar

Match Rank:10
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GYCRRAAACA
GTCGTAAAAT
 A C T G A G C T A T G C C T A G C T A G C G T A G T C A T C G A G T A C C G T A
T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T