Information for 1-RGGGGCGGGGCCW (Motif 1)

C T G A C T A G C T A G A C T G A C T G G T A C T A C G A C T G C T A G T A C G G A T C G A T C G C A T
Reverse Opposite:
C G T A C T A G C T A G A G T C A G T C T G A C A G T C C A T G A G T C A G T C A G T C G A T C G A C T
p-value:1e-85
log p-value:-1.979e+02
Information Content per bp:1.676
Number of Target Sequences with motif287.0
Percentage of Target Sequences with motif30.40%
Number of Background Sequences with motif3814.2
Percentage of Background Sequences with motif8.19%
Average Position of motif in Targets47.8 +/- 24.4bp
Average Position of motif in Background48.5 +/- 30.4bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.31
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sp1(Zf)/Promoter/Homer

Match Rank:1
Score:0.96
Offset:0
Orientation:reverse strand
Alignment:RGGGGCGGGGCCW
GGGGGCGGGGCC-
 C T G A C T A G C T A G A C T G A C T G G T A C T A C G A C T G C T A G T A C G G A T C G A T C G C A T
T C A G C A T G C T A G A C T G A C T G A G T C A C T G A C T G C T A G T A C G A G T C A T G C A C G T

POL003.1_GC-box/Jaspar

Match Rank:2
Score:0.93
Offset:-1
Orientation:forward strand
Alignment:-RGGGGCGGGGCCW
AGGGGGCGGGGCTG
 A C G T C T G A C T A G C T A G A C T G A C T G G T A C T A C G A C T G C T A G T A C G G A T C G A T C G C A T
C G T A C T A G C A T G T C A G A C T G C T A G G T A C C T A G A C T G C T A G C A T G A G T C A G C T C A T G

SP1/MA0079.3/Jaspar

Match Rank:3
Score:0.92
Offset:0
Orientation:reverse strand
Alignment:RGGGGCGGGGCCW
GGGGGCGGGGC--
 C T G A C T A G C T A G A C T G A C T G G T A C T A C G A C T G C T A G T A C G G A T C G A T C G C A T
T C A G C T A G C T A G A C T G A C T G G T A C C T A G A C T G C T A G T C A G T G A C A C G T A C G T

PB0039.1_Klf7_1/Jaspar

Match Rank:4
Score:0.91
Offset:-2
Orientation:reverse strand
Alignment:--RGGGGCGGGGCCW-
NNAGGGGCGGGGTNNA
 A C G T A C G T C T G A C T A G C T A G A C T G A C T G G T A C T A C G A C T G C T A G T A C G G A T C G A T C G C A T A C G T
G C T A C G A T C T G A C T A G C T A G A C T G A C T G G A T C C A T G A C T G C A T G C A T G A G C T G A T C T C A G C G T A

SP2/MA0516.1/Jaspar

Match Rank:5
Score:0.91
Offset:-4
Orientation:reverse strand
Alignment:----RGGGGCGGGGCCW
GGGNGGGGGCGGGGC--
 A C G T A C G T A C G T A C G T C T G A C T A G C T A G A C T G A C T G G T A C T A C G A C T G C T A G T A C G G A T C G A T C G C A T
T A C G T A C G T A C G T C G A C T A G C T A G C T A G C T A G A C T G G T A C C T A G A T C G C T A G T C A G T A G C A C G T A C G T

KLF5/MA0599.1/Jaspar

Match Rank:6
Score:0.91
Offset:1
Orientation:reverse strand
Alignment:RGGGGCGGGGCCW
-GGGGNGGGGC--
 C T G A C T A G C T A G A C T G A C T G G T A C T A C G A C T G C T A G T A C G G A T C G A T C G C A T
A C G T C T A G C T A G A C T G A C T G G A T C A C T G C A T G C T A G C T A G T G A C A C G T A C G T

KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer

Match Rank:7
Score:0.89
Offset:-2
Orientation:reverse strand
Alignment:--RGGGGCGGGGCCW
NNVDGGGYGGGGCYN
 A C G T A C G T C T G A C T A G C T A G A C T G A C T G G T A C T A C G A C T G C T A G T A C G G A T C G A T C G C A T
T A C G T G A C T C A G C T G A A C T G A C T G A C T G A G C T A C T G A C T G C T A G A C T G A G T C A G T C C T G A

Klf4/MA0039.2/Jaspar

Match Rank:8
Score:0.88
Offset:1
Orientation:forward strand
Alignment:RGGGGCGGGGCCW
-TGGGTGGGGC--
 C T G A C T A G C T A G A C T G A C T G G T A C T A C G A C T G C T A G T A C G G A T C G A T C G C A T
A C G T C G A T T C A G C T A G A T C G G A C T C A T G A C T G C T A G A C T G A G T C A C G T A C G T

KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer

Match Rank:9
Score:0.88
Offset:0
Orientation:forward strand
Alignment:RGGGGCGGGGCCW
MKGGGYGTGGCC-
 C T G A C T A G C T A G A C T G A C T G G T A C T A C G A C T G C T A G T A C G G A T C G A T C G C A T
G T A C C A G T A C T G A C T G A C T G G A T C A C T G A C G T A C T G A C T G A G T C G A T C A C G T

KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer

Match Rank:10
Score:0.87
Offset:1
Orientation:forward strand
Alignment:RGGGGCGGGGCCW
-DGGGYGKGGC--
 C T G A C T A G C T A G A C T G A C T G G T A C T A C G A C T G C T A G T A C G G A T C G A T C G C A T
A C G T C G T A C T A G A C T G A C T G G A C T C T A G C A G T C T A G C A T G G A T C A C G T A C G T