Information for 15-KYRCRCCAGCCAGCCK (Motif 33)

C A G T A G T C C T G A A G T C C T G A A T G C A G T C C G T A A C T G A G T C A G T C C G T A A C T G A G T C A G T C C A G T
Reverse Opposite:
G T C A A C T G A C T G G T A C A C G T A C T G A C T G A G T C A C G T A C T G A T C G A G C T A C T G A G C T C T A G G T A C
p-value:1e-8
log p-value:-1.859e+01
Information Content per bp:1.851
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.74%
Number of Background Sequences with motif3.6
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets51.2 +/- 17.5bp
Average Position of motif in Background38.4 +/- 18.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:KYRCRCCAGCCAGCCK----
-----SCAGYCADGCATGAC
 C A G T A G T C C T G A A G T C C T G A A T G C A G T C C G T A A C T G A G T C A G T C C G T A A C T G A G T C A G T C C A G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:KYRCRCCAGCCAGCCK
-----CCAGACAG---
 C A G T A G T C C T G A A G T C C T G A A T G C A G T C C G T A A C T G A G T C A G T C C G T A A C T G A G T C A G T C C A G T
A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:KYRCRCCAGCCAGCCK
-----BCAGACWA---
 C A G T A G T C C T G A A G T C C T G A A T G C A G T C C G T A A C T G A G T C A G T C C G T A A C T G A G T C A G T C C A G T
A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:KYRCRCCAGCCAGCCK
-----CCAGACRSVB-
 C A G T A G T C C T G A A G T C C T G A A T G C A G T C C G T A A C T G A G T C A G T C C G T A A C T G A G T C A G T C C A G T
A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T

PB0164.1_Smad3_2/Jaspar

Match Rank:5
Score:0.55
Offset:0
Orientation:forward strand
Alignment:KYRCRCCAGCCAGCCK-
TACGCCCCGCCACTCTG
 C A G T A G T C C T G A A G T C C T G A A T G C A G T C C G T A A C T G A G T C A G T C C G T A A C T G A G T C A G T C C A G T A C G T
C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G

POL006.1_BREu/Jaspar

Match Rank:6
Score:0.55
Offset:7
Orientation:forward strand
Alignment:KYRCRCCAGCCAGCCK
-------AGCGCGCC-
 C A G T A G T C C T G A A G T C C T G A A T G C A G T C C G T A A C T G A G T C A G T C C G T A A C T G A G T C A G T C C A G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G C A T A C G T A G C T C A G T G A C A C T G A G T C A G T C A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:7
Score:0.54
Offset:0
Orientation:forward strand
Alignment:KYRCRCCAGCCAGCCK-
CAAATCCAGACATCACA
 C A G T A G T C C T G A A G T C C T G A A T G C A G T C C G T A A C T G A G T C A G T C C G T A A C T G A G T C A G T C C A G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.54
Offset:6
Orientation:forward strand
Alignment:KYRCRCCAGCCAGCCK
------CAGCC-----
 C A G T A G T C C T G A A G T C C T G A A T G C A G T C C G T A A C T G A G T C A G T C C G T A A C T G A G T C A G T C C A G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:9
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-KYRCRCCAGCCAGCCK
ACTATGCCAACCTACC-
 A C G T C A G T A G T C C T G A A G T C C T G A A T G C A G T C C G T A A C T G A G T C A G T C C G T A A C T G A G T C A G T C C A G T
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:10
Score:0.53
Offset:0
Orientation:forward strand
Alignment:KYRCRCCAGCCAGCCK
SNGCACCTGCHS----
 C A G T A G T C C T G A A G T C C T G A A T G C A G T C C G T A A C T G A G T C A G T C C G T A A C T G A G T C A G T C C A G T
T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C A C G T A C G T A C G T A C G T