Information for 12-GACCAATGCA (Motif 20)

T C A G C T G A G A T C T G A C T G C A G T C A C G A T T C A G G A T C G T C A
Reverse Opposite:
C A G T C T A G A G T C G C T A C A G T A C G T A C T G C T A G G A C T A G T C
p-value:1e-9
log p-value:-2.296e+01
Information Content per bp:1.667
Number of Target Sequences with motif37.0
Percentage of Target Sequences with motif4.59%
Number of Background Sequences with motif228.5
Percentage of Background Sequences with motif1.30%
Average Position of motif in Targets45.8 +/- 25.5bp
Average Position of motif in Background50.5 +/- 36.2bp
Strand Bias (log2 ratio + to - strand density)1.1
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GACCAATGCA
AGCCAATCGG
 T C A G C T G A G A T C T G A C T G C A G T C A C G A T T C A G G A T C G T C A
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

PB0091.1_Zbtb3_1/Jaspar

Match Rank:2
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GACCAATGCA-----
AATCGCACTGCATTCCG
 A C G T A C G T T C A G C T G A G A T C T G A C T G C A G T C A C G A T T C A G G A T C G T C A A C G T A C G T A C G T A C G T A C G T
C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G

POL004.1_CCAAT-box/Jaspar

Match Rank:3
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GACCAATGCA
ACTAGCCAATCA-
 A C G T A C G T A C G T T C A G C T G A G A T C T G A C T G C A G T C A C G A T T C A G G A T C G T C A
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T

SOX9/MA0077.1/Jaspar

Match Rank:4
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GACCAATGCA
GAACAATGG-
 T C A G C T G A G A T C T G A C T G C A G T C A C G A T T C A G G A T C G T C A
C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T

PB0173.1_Sox21_2/Jaspar

Match Rank:5
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----GACCAATGCA--
NNNNNGAACAATTGANN
 A C G T A C G T A C G T A C G T A C G T T C A G C T G A G A T C T G A C T G C A G T C A C G A T T C A G G A T C G T C A A C G T A C G T
A G C T G T C A C T A G G T A C A C T G T A C G T C G A C G T A A T G C C G T A T C G A G C A T C G A T T A C G T C G A A G C T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:6
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GACCAATGCA
VRAACAATGG-
 A C G T T C A G C T G A G A T C T G A C T G C A G T C A C G A T T C A G G A T C G T C A
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T

PB0070.1_Sox30_1/Jaspar

Match Rank:7
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GACCAATGCA---
AATGAACAATGGAATT
 A C G T A C G T A C G T T C A G C T G A G A T C T G A C T G C A G T C A C G A T T C A G G A T C G T C A A C G T A C G T A C G T
C T G A G C A T C A G T A T C G T C G A C G T A A G T C G C T A C T G A C G A T C A T G T C A G G C T A G T C A G A C T G A C T

NFYB/MA0502.1/Jaspar

Match Rank:8
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----GACCAATGCA
AAATGGACCAATCAG
 A C G T A C G T A C G T A C G T A C G T T C A G C T G A G A T C T G A C T G C A G T C A C G A T T C A G G A T C G T C A
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

PB0074.1_Sox8_1/Jaspar

Match Rank:9
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----GACCAATGCA---
TNNAGAACAATANATNN
 A C G T A C G T A C G T A C G T T C A G C T G A G A T C T G A C T G C A G T C A C G A T T C A G G A T C G T C A A C G T A C G T A C G T
G C A T G C T A G T C A C G T A C A T G C T G A C G T A A G T C C G T A C T G A C G A T C G T A T C A G G C T A G C A T G T C A G T A C

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GACCAATGCA
GAACAATGGN
 T C A G C T G A G A T C T G A C T G C A G T C A C G A T T C A G G A T C G T C A
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G