Information for 3-AGGGAGAGAGTDGCCT (Motif 2)

C G T A A C T G A C T G A T C G C G T A A T C G C G T A A C T G C G T A A C T G A G C T C A T G A T C G A G T C A G T C C A G T
Reverse Opposite:
G T C A C T A G C T A G A T G C G A T C C T G A G T A C C G A T A G T C C G A T A T G C A C G T A T G C G T A C A G T C C G A T
p-value:1e-17
log p-value:-4.059e+01
Information Content per bp:1.770
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.12%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets44.2 +/- 23.8bp
Average Position of motif in Background69.5 +/- 4.1bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--AGGGAGAGAGTDGCCT
CCAGGAACAG--------
 A C G T A C G T C G T A A C T G A C T G A T C G C G T A A T C G C G T A A C T G C G T A A C T G A G C T C A T G A T C G A G T C A G T C C A G T
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---AGGGAGAGAGTDGCCT
GAAAGTGAAAGT-------
 A C G T A C G T A C G T C G T A A C T G A C T G A T C G C G T A A T C G C G T A A C T G C G T A A C T G A G C T C A T G A T C G A G T C A G T C C A G T
T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PRDM1/MA0508.1/Jaspar

Match Rank:3
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----AGGGAGAGAGTDGCCT
AGAAAGTGAAAGTGA-----
 A C G T A C G T A C G T A C G T C G T A A C T G A C T G A T C G C G T A A T C G C G T A A C T G C G T A A C T G A G C T C A T G A T C G A G T C A G T C C A G T
C G T A C T A G C T G A T C G A C T G A C T A G C A G T C T A G C G T A C T G A C G T A T C A G A C G T C T A G C T G A A C G T A C G T A C G T A C G T A C G T

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:4
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:AGGGAGAGAGTDGCCT
NAGAACAGNCTGTNCT
 C G T A A C T G A C T G A T C G C G T A A T C G C G T A A C T G C G T A A C T G A G C T C A T G A T C G A G T C A G T C C A G T
T C G A C T G A C T A G T C G A C G T A A T G C C G T A A T C G G C A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T

GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:AGGGAGAGAGTDGCCT-
-AGNACANNNTGTNCTN
 C G T A A C T G A C T G A T C G C G T A A T C G C G T A A C T G C G T A A C T G A G C T C A T G A T C G A G T C A G T C C A G T A C G T
A C G T C T G A C T A G T C G A C G T A A G T C C T G A A T C G C G T A T A G C G A C T A C T G A C G T A G C T A G T C G A C T A T G C

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.50
Offset:2
Orientation:reverse strand
Alignment:AGGGAGAGAGTDGCCT-
--GRACAGWMTGTYCTB
 C G T A A C T G A C T G A T C G C G T A A T C G C G T A A C T G C G T A A C T G A G C T C A T G A T C G A G T C A G T C C A G T A C G T
A C G T A C G T C T A G C T G A C T G A T A G C C G T A A T C G C G T A T G C A G A C T T C A G G C A T G A C T G A T C G A C T A C T G

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:7
Score:0.50
Offset:2
Orientation:reverse strand
Alignment:AGGGAGAGAGTDGCCT
--GCAGTGATTT----
 C G T A A C T G A C T G A T C G C G T A A T C G C G T A A C T G C G T A A C T G A G C T C A T G A T C G A G T C A G T C C A G T
A C G T A C G T C T A G A G T C G C T A A T C G C G A T A C T G T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--AGGGAGAGAGTDGCCT
AGAGGAAGTG--------
 A C G T A C G T C G T A A C T G A C T G A T C G C G T A A T C G C G T A A C T G C G T A A C T G A G C T C A T G A T C G A G T C A G T C C A G T
C G T A T A C G T C G A A C T G A C T G C G T A C G T A T A C G A G C T T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.49
Offset:0
Orientation:forward strand
Alignment:AGGGAGAGAGTDGCCT
TGGAACAGMA------
 C G T A A C T G A C T G A T C G C G T A A T C G C G T A A C T G C G T A A C T G A G C T C A T G A T C G A G T C A G T C C A G T
C A G T A C T G T C A G T G C A G C T A A T G C T C G A A T C G G T C A T G C A A C G T A C G T A C G T A C G T A C G T A C G T

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:10
Score:0.49
Offset:2
Orientation:reverse strand
Alignment:AGGGAGAGAGTDGCCT-
--GVACAGNMTGTYCTB
 C G T A A C T G A C T G A T C G C G T A A T C G C G T A A C T G C G T A A C T G A G C T C A T G A T C G A G T C A G T C C A G T A C G T
A C G T A C G T C T A G T C G A C G T A T A G C C G T A C A T G C G T A T G A C G C A T T A C G G A C T A G C T G A T C G A C T A C T G