Information for 9-AAGGTGGCACTGHGGA (Motif 18)

T C G A C G T A A C T G A T C G A C G T A C T G A C T G A G T C C G T A A G T C A C G T A T C G G A C T A C T G A T C G C G T A
Reverse Opposite:
C G A T A T G C G T A C C G T A A T G C C G T A A C T G C G A T A C T G A G T C A G T C C G T A T A G C A G T C C G A T A G C T
p-value:1e-10
log p-value:-2.511e+01
Information Content per bp:1.828
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.74%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets59.2 +/- 22.5bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hic1/MA0739.1/Jaspar

Match Rank:1
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:AAGGTGGCACTGHGGA
-GGTTGGCAT------
 T C G A C G T A A C T G A T C G A C G T A C T G A C T G A G T C C G T A A G T C A C G T A T C G G A C T A C T G A T C G C G T A
A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:2
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---AAGGTGGCACTGHGGA
NGTAGGTTGGCATNNN---
 A C G T A C G T A C G T T C G A C G T A A C T G A T C G A C G T A C T G A C T G A G T C C G T A A G T C A C G T A T C G G A C T A C T G A T C G C G T A
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T A C G T A C G T A C G T

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.60
Offset:1
Orientation:forward strand
Alignment:AAGGTGGCACTGHGGA
-AGGTGTCA-------
 T C G A C G T A A C T G A T C G A C G T A C T G A C T G A G T C C G T A A G T C A C G T A T C G G A C T A C T G A T C G C G T A
A C G T C T G A C T A G A T C G A G C T A C T G G A C T A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:AAGGTGGCACTGHGGA
--NTTGGCANN-----
 T C G A C G T A A C T G A T C G A C G T A C T G A C T G A G T C C G T A A G T C A C G T A T C G G A C T A C T G A T C G C G T A
A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:5
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:AAGGTGGCACTGHGGA
-NNTTGGCANN-----
 T C G A C G T A A C T G A T C G A C G T A C T G A C T G A G T C C G T A A G T C A C G T A T C G G A C T A C T G A T C G C G T A
A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:6
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:AAGGTGGCACTGHGGA
-NGTGGGCAT------
 T C G A C G T A A C T G A T C G A C G T A C T G A C T G A G T C C G T A A G T C A C G T A T C G G A C T A C T G A T C G C G T A
A C G T T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:7
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:AAGGTGGCACTGHGGA
-ARNTGACA-------
 T C G A C G T A A C T G A T C G A C G T A C T G A C T G A G T C C G T A A G T C A C G T A T C G G A C T A C T G A T C G C G T A
A C G T T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:AAGGTGGCACTGHGGA
--CTTGGCAA------
 T C G A C G T A A C T G A T C G A C G T A C T G A C T G A G T C C G T A A G T C A C G T A T C G G A C T A C T G A T C G C G T A
A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:9
Score:0.56
Offset:-7
Orientation:reverse strand
Alignment:-------AAGGTGGCACTGHGGA
TGGCCACCAGGTGGCACTNT---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A C G T A A C T G A T C G A C G T A C T G A C T G A G T C C G T A A G T C A C G T A T C G G A C T A C T G A T C G C G T A
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:10
Score:0.56
Offset:3
Orientation:forward strand
Alignment:AAGGTGGCACTGHGGA
---TTGGCA-------
 T C G A C G T A A C T G A T C G A C G T A C T G A C T G A G T C C G T A A G T C A C G T A T C G G A C T A C T G A T C G C G T A
A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T