Information for 11-ATGATCATGC (Motif 22)

C G T A A G C T A C T G C G T A C A G T A T G C C T G A A C G T A C T G A G T C
Reverse Opposite:
C T A G G T A C C G T A A G C T A T C G G T C A C G A T A G T C T C G A A C G T
p-value:1e-9
log p-value:-2.122e+01
Information Content per bp:1.846
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.23%
Number of Background Sequences with motif31.4
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets33.3 +/- 27.5bp
Average Position of motif in Background48.2 +/- 43.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0017.1_Cux1_2/Jaspar

Match Rank:1
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----ATGATCATGC
TAATGATGATCACTA
 A C G T A C G T A C G T A C G T A C G T C G T A A G C T A C T G C G T A C A G T A T G C C T G A A C G T A C T G A G T C
C G A T T G C A T C G A A G C T C A T G G C T A C G A T C T A G C G T A C A G T G A T C T C G A G T A C C G A T C G T A

PH0016.1_Cux1_1/Jaspar

Match Rank:2
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----ATGATCATGC---
TNAGNTGATCAACCGGT
 A C G T A C G T A C G T A C G T C G T A A G C T A C T G C G T A C A G T A T G C C T G A A C G T A C T G A G T C A C G T A C G T A C G T
G A C T T A G C G C T A A T C G C A T G C G A T C T A G C G T A A G C T G A T C C G T A C T G A A G T C A G T C C T A G T A C G G A C T

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---ATGATCATGC--
CTCATGAATATTCAT
 A C G T A C G T A C G T C G T A A G C T A C T G C G T A C A G T A T G C C T G A A C G T A C T G A G T C A C G T A C G T
T A G C G A C T G A T C C G T A A C G T T C A G G T C A C G T A A C G T C G T A C G A T A C G T A G T C C G T A C G A T

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:4
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:ATGATCATGC
---GTCATN-
 C G T A A G C T A C T G C G T A C A G T A T G C C T G A A C G T A C T G A G T C
A C G T A C G T A C G T T C A G A C G T G A T C C G T A A G C T A T C G A C G T

Esrra/MA0592.2/Jaspar

Match Rank:5
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:ATGATCATGC-
ATGACCTTGAA
 C G T A A G C T A C T G C G T A C A G T A T G C C T G A A C G T A C T G A G T C A C G T
C G T A A G C T T A C G T G C A T G A C T G A C A G C T A G C T A T C G C T G A T G C A

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:6
Score:0.57
Offset:0
Orientation:forward strand
Alignment:ATGATCATGC
ATGMATATDC
 C G T A A G C T A C T G C G T A C A G T A T G C C T G A A C G T A C T G A G T C
G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

PB0014.1_Esrra_1/Jaspar

Match Rank:7
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----ATGATCATGC---
NNNNATGACCTTGANTN
 A C G T A C G T A C G T A C G T C G T A A G C T A C T G C G T A C A G T A T G C C T G A A C G T A C T G A G T C A C G T A C G T A C G T
C A G T G T A C T C A G A G T C C G T A A G C T T C A G G C T A G A T C G T A C A G C T G A C T A T C G T C G A G T C A C A G T G T C A

ESRRB/MA0141.3/Jaspar

Match Rank:8
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-ATGATCATGC
NATGACCTTGA
 A C G T C G T A A G C T A C T G C G T A C A G T A T G C C T G A A C G T A C T G A G T C
C G A T C G T A G A C T C T A G T C G A T A G C A G T C A G C T C G A T A T C G C T G A

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:9
Score:0.56
Offset:0
Orientation:forward strand
Alignment:ATGATCATGC
ATGAATATTC
 C G T A A G C T A C T G C G T A C A G T A T G C C T G A A C G T A C T G A G T C
G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:10
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-ATGATCATGC-
TATGCWAATBAV
 A C G T C G T A A G C T A C T G C G T A C A G T A T G C C T G A A C G T A C T G A G T C A C G T
G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G