Information for 9-GGGAGTTGCC (Motif 20)

A C T G A C T G A T C G C G T A C T A G C G A T A C G T A C T G A T G C A G T C
Reverse Opposite:
C T A G A T C G A G T C G T C A G C T A G A T C C G A T T A G C A G T C G T A C
p-value:1e-9
log p-value:-2.175e+01
Information Content per bp:1.839
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.34%
Number of Background Sequences with motif159.4
Percentage of Background Sequences with motif0.36%
Average Position of motif in Targets45.4 +/- 28.8bp
Average Position of motif in Background49.6 +/- 32.5bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:1
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:GGGAGTTGCC
GGGAATTTCC
 A C T G A C T G A T C G C G T A C T A G C G A T A C G T A C T G A T G C A G T C
A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C

RELA/MA0107.1/Jaspar

Match Rank:2
Score:0.75
Offset:0
Orientation:forward strand
Alignment:GGGAGTTGCC
GGGAATTTCC
 A C T G A C T G A T C G C G T A C T A G C G A T A C G T A C T G A T G C A G T C
A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C

MF0003.1_REL_class/Jaspar

Match Rank:3
Score:0.72
Offset:0
Orientation:forward strand
Alignment:GGGAGTTGCC
GGGGATTTCC
 A C T G A C T G A T C G C G T A C T A G C G A T A C G T A C T G A T G C A G T C
A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:4
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GGGAGTTGCC
NGGGGATTTCCC
 A C G T A C G T A C T G A C T G A T C G C G T A C T A G C G A T A C G T A C T G A T G C A G T C
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C

KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer

Match Rank:5
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GGGAGTTGCC
MKGGGYGTGGCC
 A C G T A C G T A C T G A C T G A T C G C G T A C T A G C G A T A C G T A C T G A T G C A G T C
G T A C C A G T A C T G A C T G A C T G G A T C A C T G A C G T A C T G A C T G A G T C G A T C

REL/MA0101.1/Jaspar

Match Rank:6
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GGGAGTTGCC
GGGGATTTCC
 A C T G A C T G A T C G C G T A C T A G C G A T A C G T A C T G A T G C A G T C
A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C

HES7/MA0822.1/Jaspar

Match Rank:7
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GGGAGTTGCC-
TGGCACGTGCCA
 A C G T A C T G A C T G A T C G C G T A C T A G C G A T A C G T A C T G A T G C A G T C A C G T
G A C T T A C G C T A G A G T C C G T A A G T C A C T G A G C T C T A G A G T C A G T C C T G A

AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer

Match Rank:8
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GGGAGTTGCC
TGGCAGTTGG-
 A C G T A C T G A C T G A T C G C G T A C T A G C G A T A C G T A C T G A T G C A G T C
G A C T C T A G C T A G A G T C T G C A A C T G A C G T A C G T C T A G T C A G A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:9
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GGGAGTTGCC--
-NNACTTGCCTT
 A C T G A C T G A T C G C G T A C T A G C G A T A C G T A C T G A T G C A G T C A C G T A C G T
A C G T T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T

PB0149.1_Myb_2/Jaspar

Match Rank:10
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----GGGAGTTGCC--
NNNTGGCAGTTGGTNN
 A C G T A C G T A C G T A C G T A C T G A C T G A T C G C G T A C T A G C G A T A C G T A C T G A T G C A G T C A C G T A C G T
C T A G T A G C T C G A G A C T C T A G C T A G A G T C C T G A A C T G A C G T G A C T C T A G T C A G C A G T G T A C T A C G