Information for 4-TTTGCCTGCCAAR (Motif 7)

C G A T A G C T A C G T A C T G A G T C A G T C A C G T A C T G A T G C G T A C C G T A C T G A C T G A
Reverse Opposite:
G A C T A G C T A C G T A C T G A T C G A G T C C G T A A C T G C T A G A G T C C G T A C T G A C G T A
p-value:1e-13
log p-value:-3.168e+01
Information Content per bp:1.851
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.92%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets54.6 +/- 28.4bp
Average Position of motif in Background39.1 +/- 8.2bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

E2F7/MA0758.1/Jaspar

Match Rank:1
Score:0.70
Offset:0
Orientation:forward strand
Alignment:TTTGCCTGCCAAR-
TTTTCCCGCCAAAA
 C G A T A G C T A C G T A C T G A G T C A G T C A C G T A C T G A T G C G T A C C G T A C T G A C T G A A C G T
C G A T C G A T A G C T A G C T A T G C A T G C A G T C T C A G A G T C A T G C C G T A C G T A G C T A C G T A

E2F8/MA0865.1/Jaspar

Match Rank:2
Score:0.68
Offset:1
Orientation:forward strand
Alignment:TTTGCCTGCCAAR
-TTTCCCGCCAAA
 C G A T A G C T A C G T A C T G A G T C A G T C A C G T A C T G A T G C G T A C C G T A C T G A C T G A
A C G T G A C T A G C T A C G T A G T C A G T C A T G C T A C G A G T C T A G C C T G A C G T A G C T A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.68
Offset:5
Orientation:forward strand
Alignment:TTTGCCTGCCAAR
-----TTGCCAAG
 C G A T A G C T A C G T A C T G A G T C A G T C A C G T A C T G A T G C G T A C C G T A C T G A C T G A
A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

NFIA/MA0670.1/Jaspar

Match Rank:4
Score:0.67
Offset:4
Orientation:forward strand
Alignment:TTTGCCTGCCAAR-
----GGTGCCAAGT
 C G A T A G C T A C G T A C T G A G T C A G T C A C G T A C T G A T G C G T A C C G T A C T G A C T G A A C G T
A C G T A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:5
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:TTTGCCTGCCAAR
-TTGCGTGCVA--
 C G A T A G C T A C G T A C T G A G T C A G T C A C G T A C T G A T G C G T A C C G T A C T G A C T G A
A C G T A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:6
Score:0.65
Offset:4
Orientation:forward strand
Alignment:TTTGCCTGCCAAR
----CGTGCCAAG
 C G A T A G C T A C G T A C T G A G T C A G T C A C G T A C T G A T G C G T A C C G T A C T G A C T G A
A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NFIC/MA0161.1/Jaspar

Match Rank:7
Score:0.65
Offset:6
Orientation:reverse strand
Alignment:TTTGCCTGCCAAR
------TGCCAA-
 C G A T A G C T A C G T A C T G A G T C A G T C A C G T A C T G A T G C G T A C C G T A C T G A C T G A
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:8
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TTTGCCTGCCAAR-
ATTTGCATAACAAAG
 A C G T C G A T A G C T A C G T A C T G A G T C A G T C A C G T A C T G A T G C G T A C C G T A C T G A C T G A A C G T
G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TTTGCCTGCCAAR-
ATTTGCATAACAATG
 A C G T C G A T A G C T A C G T A C T G A G T C A G T C A C G T A C T G A T G C G T A C C G T A C T G A C T G A A C G T
G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G

MEIS2/MA0774.1/Jaspar

Match Rank:10
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:TTTGCCTGCCAAR
----GCTGTCAA-
 C G A T A G C T A C G T A C T G A G T C A G T C A C G T A C T G A T G C G T A C C G T A C T G A C T G A
A C G T A C G T A C G T A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T