Information for 4-YMTTGGCAAGWKGCTT (Motif 7)

A G C T T G C A G A C T A C G T C T A G A C T G G T A C G C T A C T G A A T C G C G T A C A G T A C T G G T A C A G C T C G A T
Reverse Opposite:
C G T A C T G A A C T G A G T C G T C A G C A T T A G C A G C T C A G T A C T G A G T C G A T C C G T A C G T A A C G T C T G A
p-value:1e-11
log p-value:-2.724e+01
Information Content per bp:1.699
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif2.51%
Number of Background Sequences with motif19.6
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets30.2 +/- 23.2bp
Average Position of motif in Background56.8 +/- 28.5bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.1/Jaspar

Match Rank:1
Score:0.67
Offset:2
Orientation:forward strand
Alignment:YMTTGGCAAGWKGCTT
--TTGGCA--------
 A G C T T G C A G A C T A C G T C T A G A C T G G T A C G C T A C T G A A T C G C G T A C A G T A C T G G T A C A G C T C G A T
A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:YMTTGGCAAGWKGCTT
NNTTGGCANN------
 A G C T T G C A G A C T A C G T C T A G A C T G G T A C G C T A C T G A A T C G C G T A C A G T A C T G G T A C A G C T C G A T
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:YMTTGGCAAGWKGCTT
-NTTGGCANN------
 A G C T T G C A G A C T A C G T C T A G A C T G G T A C G C T A C T G A A T C G C G T A C A G T A C T G G T A C A G C T C G A T
A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:YMTTGGCAAGWKGCTT
-CTTGGCAA-------
 A G C T T G C A G A C T A C G T C T A G A C T G G T A C G C T A C T G A A T C G C G T A C A G T A C T G G T A C A G C T C G A T
A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:5
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:YMTTGGCAAGWKGCTT
--TTGGCATGGTGCCA
 A G C T T G C A G A C T A C G T C T A G A C T G G T A C G C T A C T G A A T C G C G T A C A G T A C T G G T A C A G C T C G A T
A C G T A C G T G A C T A C G T A C T G A C T G A G T C C G T A G A C T A T C G A T C G C A G T A C T G A G T C A G T C C G T A

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.59
Offset:1
Orientation:forward strand
Alignment:YMTTGGCAAGWKGCTT-
-CTTGGCANNNTGCCAA
 A G C T T G C A G A C T A C G T C T A G A C T G G T A C G C T A C T G A A T C G C G T A C A G T A C T G G T A C A G C T C G A T A C G T
A C G T A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:7
Score:0.59
Offset:2
Orientation:forward strand
Alignment:YMTTGGCAAGWKGCTT
--CTGGCAGNCTGCCA
 A G C T T G C A G A C T A C G T C T A G A C T G G T A C G C T A C T G A A T C G C G T A C A G T A C T G G T A C A G C T C G A T
A C G T A C G T A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

POL004.1_CCAAT-box/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-YMTTGGCAAGWKGCTT
TGATTGGCTANN-----
 A C G T A G C T T G C A G A C T A C G T C T A G A C T G G T A C G C T A C T G A A T C G C G T A C A G T A C T G G T A C A G C T C G A T
A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T A C G T A C G T A C G T A C G T A C G T

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:9
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:YMTTGGCAAGWKGCTT
-AATGGAAAAT-----
 A G C T T G C A G A C T A C G T C T A G A C T G G T A C G C T A C T G A A T C G C G T A C A G T A C T G G T A C A G C T C G A T
A C G T T C G A T C G A A G C T A C T G A C T G C G T A C G T A G T C A T G C A G C A T A C G T A C G T A C G T A C G T A C G T

NFATC1/MA0624.1/Jaspar

Match Rank:10
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:YMTTGGCAAGWKGCTT
-NNTGGAAANN-----
 A G C T T G C A G A C T A C G T C T A G A C T G G T A C G C T A C T G A A T C G C G T A C A G T A C T G G T A C A G C T C G A T
A C G T C G T A C T G A G A C T C T A G A C T G C T G A C T G A G C T A C G T A G C A T A C G T A C G T A C G T A C G T A C G T