Information for 3-TTTTATTGGA (Motif 4)

C A G T C G A T C G A T A C G T G T C A A C G T C G A T C T A G A T C G C G T A
Reverse Opposite:
G C A T T A G C G A T C G C T A T G C A A C G T C G T A C G T A G C T A G T C A
p-value:1e-17
log p-value:-4.046e+01
Information Content per bp:1.652
Number of Target Sequences with motif66.0
Percentage of Target Sequences with motif20.69%
Number of Background Sequences with motif2887.3
Percentage of Background Sequences with motif6.11%
Average Position of motif in Targets57.7 +/- 24.9bp
Average Position of motif in Background50.0 +/- 29.7bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA13/MA0650.1/Jaspar

Match Rank:1
Score:0.95
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATTGGA
TTTTTATTGG-
 A C G T C A G T C G A T C G A T A C G T G T C A A C G T C G A T C T A G A T C G C G T A
C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:2
Score:0.95
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATTGGA
NTTTTATTGG-
 A C G T C A G T C G A T C G A T A C G T G T C A A C G T C G A T C T A G A T C G C G T A
C A T G C A G T C A G T C G A T G C A T C T G A G C A T C A G T C T A G A T C G A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:3
Score:0.94
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATTGGA
NTTTTATTGG-
 A C G T C A G T C G A T C G A T A C G T G T C A A C G T C G A T C T A G A T C G C G T A
C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:4
Score:0.93
Offset:-4
Orientation:reverse strand
Alignment:----TTTTATTGGA--
NNANTTTTATTGGNNN
 A C G T A C G T A C G T A C G T C A G T C G A T C G A T A C G T G T C A A C G T C G A T C T A G A T C G C G T A A C G T A C G T
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G

PH0057.1_Hoxb13/Jaspar

Match Rank:5
Score:0.92
Offset:-4
Orientation:reverse strand
Alignment:----TTTTATTGGA--
NNAATTTTATTGGNTN
 A C G T A C G T A C G T A C G T C A G T C G A T C G A T A C G T G T C A A C G T C G A T C T A G A T C G C G T A A C G T A C G T
A T G C C T A G C G T A C G T A A C G T C G A T C G A T G C A T C T G A G A C T C A G T C T A G T A C G C A T G G A C T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:6
Score:0.92
Offset:0
Orientation:reverse strand
Alignment:TTTTATTGGA
TTTTATTRGN
 C A G T C G A T C G A T A C G T G T C A A C G T C G A T C T A G A T C G C G T A
C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:7
Score:0.91
Offset:0
Orientation:forward strand
Alignment:TTTTATTGGA
TTTTATKRGG
 C A G T C G A T C G A T A C G T G T C A A C G T C G A T C T A G A T C G C G T A
C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G

CDX1/MA0878.1/Jaspar

Match Rank:8
Score:0.88
Offset:0
Orientation:reverse strand
Alignment:TTTTATTGGA
TTTTATTGC-
 C A G T C G A T C G A T A C G T G T C A A C G T C G A T C T A G A T C G C G T A
C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T

PH0075.1_Hoxd10/Jaspar

Match Rank:9
Score:0.86
Offset:-5
Orientation:reverse strand
Alignment:-----TTTTATTGGA--
NTNAATTTTATTGNATT
 A C G T A C G T A C G T A C G T A C G T C A G T C G A T C G A T A C G T G T C A A C G T C G A T C T A G A T C G C G T A A C G T A C G T
C G T A G C A T G C T A G C T A C T G A A G C T C G A T C G A T C G A T C T G A G C A T C A G T C T A G A G T C T G C A G A C T A C G T

CDX2/MA0465.1/Jaspar

Match Rank:10
Score:0.83
Offset:0
Orientation:reverse strand
Alignment:TTTTATTGGA-
TTTTATGGCTN
 C A G T C G A T C G A T A C G T G T C A A C G T C G A T C T A G A T C G C G T A A C G T
A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T