Information for 13-CCAGTCDGGCTCT (Motif 19)

A G T C A G T C C G T A A C T G A C G T A T G C C A T G A C T G A C T G A G T C C G A T A G T C A C G T
Reverse Opposite:
C G T A A C T G C G T A A C T G G T A C T G A C G T A C A T C G C G T A A G T C C G A T A C T G C T A G
p-value:1e-6
log p-value:-1.604e+01
Information Content per bp:1.800
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.57%
Number of Background Sequences with motif16.3
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets47.6 +/- 17.2bp
Average Position of motif in Background59.2 +/- 24.2bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CCAGTCDGGCTCT-
--TGTCTGDCACCT
 A G T C A G T C C G T A A C T G A C G T A T G C C A T G A C T G A C T G A G T C C G A T A G T C A C G T A C G T
A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CCAGTCDGGCTCT-
-CTGTCTGTCACCT
 A G T C A G T C C G T A A C T G A C G T A T G C C A T G A C T G A C T G A G T C C G A T A G T C A C G T A C G T
A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:3
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CCAGTCDGGCTCT
GSCTGTCACTCA--
 A C G T A G T C A G T C C G T A A C T G A C G T A T G C C A T G A C T G A C T G A G T C C G A T A G T C A C G T
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CCAGTCDGGCTCT
-CTGTCTGG----
 A G T C A G T C C G T A A C T G A C G T A T G C C A T G A C T G A C T G A G T C C G A T A G T C A C G T
A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CCAGTCDGGCTCT
NCTGTCAATCAN-
 A G T C A G T C C G T A A C T G A C G T A T G C C A T G A C T G A C T G A G T C C G A T A G T C A C G T
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:6
Score:0.53
Offset:6
Orientation:forward strand
Alignment:CCAGTCDGGCTCT---
------AASCACTCAA
 A G T C A G T C C G T A A C T G A C G T A T G C C A T G A C T G A C T G A G T C C G A T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:7
Score:0.51
Offset:7
Orientation:reverse strand
Alignment:CCAGTCDGGCTCT----
-------NSCACTYVAV
 A G T C A G T C C G T A A C T G A C G T A T G C C A T G A C T G A C T G A G T C C G A T A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-CCAGTCDGGCTCT
VBSYGTCTGG----
 A C G T A G T C A G T C C G T A A C T G A C G T A T G C C A T G A C T G A C T G A G T C C G A T A G T C A C G T
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:9
Score:0.51
Offset:-3
Orientation:reverse strand
Alignment:---CCAGTCDGGCTCT-
NNTNNTGTCTGGNNTNG
 A C G T A C G T A C G T A G T C A G T C C G T A A C T G A C G T A T G C C A T G A C T G A C T G A G T C C G A T A G T C A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.51
Offset:0
Orientation:forward strand
Alignment:CCAGTCDGGCTCT
GCTGTG-------
 A G T C A G T C C G T A A C T G A C G T A T G C C A T G A C T G A C T G A G T C C G A T A G T C A C G T
T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T