Information for 13-GTGCTAAACT (Motif 30)

A C T G A C G T A C T G A G T C A C G T C G T A C G T A C G T A A G T C A C G T
Reverse Opposite:
C G T A A C T G C G A T A C G T A C G T C G T A A C T G A G T C C G T A A G T C
p-value:1e-8
log p-value:-1.990e+01
Information Content per bp:1.962
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif7.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets36.3 +/- 22.8bp
Average Position of motif in Background55.4 +/- 29.9bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:1
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GTGCTAAACT
AGGTGTTAAT--
 A C G T A C G T A C T G A C G T A C T G A G T C A C G T C G T A C G T A C G T A A G T C A C G T
C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T A C G T A C G T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:2
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GTGCTAAACT
AAGGTGTKAA---
 A C G T A C G T A C G T A C T G A C G T A C T G A G T C A C G T C G T A C G T A C G T A A G T C A C G T
C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A A C G T A C G T A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:3
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GTGCTAAACT
--GCTAATCC
 A C T G A C G T A C T G A G T C A C G T C G T A C G T A C G T A A G T C A C G T
A C G T A C G T A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C

NFIA/MA0670.1/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GTGCTAAACT
GGTGCCAAGT-
 A C G T A C T G A C G T A C T G A G T C A C G T C G T A C G T A C G T A A G T C A C G T
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T

BARHL2/MA0635.1/Jaspar

Match Rank:5
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GTGCTAAACT--
--GCTAAACGGT
 A C T G A C G T A C T G A G T C A C G T C G T A C G T A C G T A A G T C A C G T A C G T A C G T
A C G T A C G T T A C G G A T C C G A T C G T A C G T A C G T A G A T C C T A G T C A G G A C T

TBX2/MA0688.1/Jaspar

Match Rank:6
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---GTGCTAAACT
AAGGTGTGAAA--
 A C G T A C G T A C G T A C T G A C G T A C T G A G T C A C G T C G T A C G T A C G T A A G T C A C G T
C G T A C T G A T C A G A T C G A G C T C T A G G A C T A C T G C T G A C G T A C G T A A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GTGCTAAACT
AGGTGHCAGACA
 A C G T A C G T A C T G A C G T A C T G A G T C A C G T C G T A C G T A C G T A A G T C A C G T
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

PB0194.1_Zbtb12_2/Jaspar

Match Rank:8
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---GTGCTAAACT--
AGNGTTCTAATGANN
 A C G T A C G T A C G T A C T G A C G T A C T G A G T C A C G T C G T A C G T A C G T A A G T C A C G T A C G T A C G T
G C T A T C A G T A G C C A T G C A G T C A G T G T A C A G C T G C T A G C T A A G C T T A C G C T G A A C G T C G T A

PB0029.1_Hic1_1/Jaspar

Match Rank:9
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GTGCTAAACT---
ACTATGCCAACCTACC
 A C G T A C G T A C G T A C T G A C G T A C T G A G T C A C G T C G T A C G T A C G T A A G T C A C G T A C G T A C G T A C G T
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:10
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:GTGCTAAACT-
---YTAATCCY
 A C T G A C G T A C T G A G T C A C G T C G T A C G T A C G T A A G T C A C G T A C G T
A C G T A C G T A C G T G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C