Information for 13-CCCCTTGGCTGGC (Motif 14)

A G T C G A T C G T A C G A T C G C A T C A G T A C T G T A C G G A T C G C A T C A T G A T C G T A G C
Reverse Opposite:
A T C G T A G C G T A C C G T A C T A G A G T C T G A C G T C A C G T A C T A G C A T G C T A G T C A G
p-value:1e-12
log p-value:-2.776e+01
Information Content per bp:1.546
Number of Target Sequences with motif69.0
Percentage of Target Sequences with motif9.16%
Number of Background Sequences with motif1660.3
Percentage of Background Sequences with motif3.49%
Average Position of motif in Targets50.5 +/- 26.1bp
Average Position of motif in Background49.9 +/- 29.9bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CCCCTTGGCTGGC
NNACTTGCCTT--
 A G T C G A T C G T A C G A T C G C A T C A G T A C T G T A C G G A T C G C A T C A T G A T C G T A G C
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.63
Offset:4
Orientation:forward strand
Alignment:CCCCTTGGCTGGC
----TWGTCTGV-
 A G T C G A T C G T A C G A T C G C A T C A G T A C T G T A C G G A T C G C A T C A T G A T C G T A G C
A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.62
Offset:4
Orientation:forward strand
Alignment:CCCCTTGGCTGGC
----TTGGCA---
 A G T C G A T C G T A C G A T C G C A T C A G T A C T G T A C G G A T C G C A T C A T G A T C G T A G C
A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CCCCTTGGCTGGC
---NTTGGCANN-
 A G T C G A T C G T A C G A T C G C A T C A G T A C T G T A C G G A T C G C A T C A T G A T C G T A G C
A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:5
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CCCCTTGGCTGGC
CCGATTGGCT---
 A G T C G A T C G T A C G A T C G C A T C A G T A C T G T A C G G A T C G C A T C A T G A T C G T A G C
A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T A C G T A C G T A C G T

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:6
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CCCCTTGGCTGGC-
GGGGCTYGKCTGGGA
 A C G T A G T C G A T C G T A C G A T C G C A T C A G T A C T G T A C G G A T C G C A T C A T G A T C G T A G C A C G T
C T A G C A T G C A T G T A C G A G T C G C A T A G C T C T A G A C G T A G T C G A C T A C T G A C T G A C T G T C G A

Znf423/MA0116.1/Jaspar

Match Rank:7
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CCCCTTGGCTGGC
GCACCCCTGGGTGCC
 A C G T A C G T A G T C G A T C G T A C G A T C G C A T C A G T A C T G T A C G G A T C G C A T C A T G A T C G T A G C
A C T G T G A C G T C A G T A C A G T C A G T C G A T C C G A T C T A G A C T G A C T G A C G T A C T G A T G C A G T C

NFIA/MA0670.1/Jaspar

Match Rank:8
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CCCCTTGGCTGGC
--NNTTGGCANN-
 A G T C G A T C G T A C G A T C G C A T C A G T A C T G T A C G G A T C G C A T C A T G A T C G T A G C
A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:CCCCTTGGCTGGC
---CTTGGCAA--
 A G T C G A T C G T A C G A T C G C A T C A G T A C T G T A C G G A T C G C A T C A T G A T C G T A G C
A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:10
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---CCCCTTGGCTGGC
GTCATGCHTGRCTGS-
 A C G T A C G T A C G T A G T C G A T C G T A C G A T C G C A T C A G T A C T G T A C G G A T C G C A T C A T G A T C G T A G C
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C A C G T