Information for 6-GAGTACACTGAGT (Motif 7)

C T A G C T G A A T C G A G C T C G T A A T G C C T G A A G T C C G A T A C T G C G T A A C T G C G A T
Reverse Opposite:
C G T A G T A C C G A T A G T C C G T A A C T G A G C T A T C G A C G T C T G A A T G C A G C T A G T C
p-value:1e-16
log p-value:-3.782e+01
Information Content per bp:1.794
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.46%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets46.9 +/- 24.1bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Vdr/MA0693.1/Jaspar

Match Rank:1
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GAGTACACTGAGT---
GAGTTCATTGAGTTCA
 C T A G C T G A A T C G A G C T C G T A A T G C C T G A A G T C C G A T A C T G C G T A A C T G C G A T A C G T A C G T A C G T
T C A G T C G A C A T G A C G T A C G T A G T C C T G A G A C T G A C T T C A G T C G A C T A G A C G T A C G T A G T C C T G A

Ar/MA0007.3/Jaspar

Match Rank:2
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GAGTACACTGAGT----
GGGAACACGGTGTACCC
 C T A G C T G A A T C G A G C T C G T A A T G C C T G A A G T C C G A T A C T G C G T A A C T G C G A T A C G T A C G T A C G T A C G T
C T A G C T A G C T A G G C T A G T C A T A G C T C G A A G T C T A C G T C A G G A C T A T C G G C A T C G T A G A T C G A T C G A T C

VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer

Match Rank:3
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GAGTACACTGAGT------
NGAGGTCANNGAGTTCANNN
 A C G T C T A G C T G A A T C G A G C T C G T A A T G C C T G A A G T C C G A T A C T G C G T A A C T G C G A T A C G T A C G T A C G T A C G T A C G T A C G T
C T G A T C A G C T G A C T A G C A T G A C G T A T G C C G T A A T G C G C A T T C A G C T G A A C T G A C G T C A G T A G T C C G T A C A G T C T A G C A T G

NR3C1/MA0113.3/Jaspar

Match Rank:4
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GAGTACACTGAGT----
GGGTACATAATGTTCCC
 C T A G C T G A A T C G A G C T C G T A A T G C C T G A A G T C C G A T A C T G C G T A A C T G C G A T A C G T A C G T A C G T A C G T
C T A G C T A G C T A G C G A T C G T A A T G C C T G A G A C T C G T A C T G A G A C T A T C G A C G T G C A T G A T C G A T C G T A C

NR3C2/MA0727.1/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GAGTACACTGAGT----
GGGAACATTGTGTTCCC
 C T A G C T G A A T C G A G C T C G T A A T G C C T G A A G T C C G A T A C T G C G T A A C T G C G A T A C G T A C G T A C G T A C G T
C A T G T C A G C T A G C G T A C T G A A T G C C T G A G A C T G C A T C T A G G A C T A T C G A C G T G C A T G T A C G A T C G T A C

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:6
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----GAGTACACTGAGT
TTCNAAGTACTTNNNNN
 A C G T A C G T A C G T A C G T C T A G C T G A A T C G A G C T C G T A A T G C C T G A A G T C C G A T A C T G C G T A A C T G C G A T
C A G T A C G T A G T C T G A C C T G A C T G A C A T G A G C T T C G A G T A C G A C T G A C T A T C G T A C G G C T A C A T G A G C T

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GAGTACACTGAGT--
VAGRACAKWCTGTYC
 C T A G C T G A A T C G A G C T C G T A A T G C C T G A A G T C C G A T A C T G C G T A A C T G C G A T A C G T A C G T
T G A C C T G A C T A G C T G A C G T A A G T C C T G A A C G T G C A T T A G C G C A T A T C G G A C T G A C T G A T C

GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GAGTACACTGAGT---
NAGNACANNNTGTNCT
 C T A G C T G A A T C G A G C T C G T A A T G C C T G A A G T C C G A T A C T G C G T A A C T G C G A T A C G T A C G T A C G T
T A C G C T G A C T A G T C G A C G T A A G T C C T G A A T C G G C A T T A G C G A C T A C T G A C G T A G C T A G T C G A C T

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:9
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GAGTACACTGAGT---
NAGAACAGNCTGTNCT
 C T A G C T G A A T C G A G C T C G T A A T G C C T G A A G T C C G A T A C T G C G T A A C T G C G A T A C G T A C G T A C G T
T C G A C T G A C T A G T C G A C G T A A T G C C G T A A T C G G C A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GAGTACACTGAGT
SSAATCCACANN--
 A C G T C T A G C T G A A T C G A G C T C G T A A T G C C T G A A G T C C G A T A C T G C G T A A C T G C G A T
A T G C T A G C C T G A C G T A A C G T G T A C G T A C C T G A A G T C C G T A C T G A G T A C A C G T A C G T