Information for 3-TTTATGGGCT (Motif 3)

A C G T A C G T A C G T G T C A A C G T C T A G C A T G A C T G G A T C G C A T
Reverse Opposite:
C G T A C A T G A G T C G T A C A G T C C G T A A C G T C G T A C G T A C G T A
p-value:1e-26
log p-value:-6.198e+01
Information Content per bp:1.858
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif2.19%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets47.1 +/- 28.8bp
Average Position of motif in Background74.8 +/- 5.0bp
Strand Bias (log2 ratio + to - strand density)1.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:1
Score:0.82
Offset:-1
Orientation:forward strand
Alignment:-TTTATGGGCT
TTTTATKRGG-
 A C G T A C G T A C G T A C G T G T C A A C G T C T A G C A T G A C T G G A T C G C A T
C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:2
Score:0.81
Offset:-2
Orientation:reverse strand
Alignment:--TTTATGGGCT
NTTTTATTGG--
 A C G T A C G T A C G T A C G T A C G T G T C A A C G T C T A G C A T G A C T G G A T C G C A T
C A T G C A G T C A G T C G A T G C A T C T G A G C A T C A G T C T A G A T C G A C G T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:3
Score:0.79
Offset:-1
Orientation:reverse strand
Alignment:-TTTATGGGCT
TTTTATTRGN-
 A C G T A C G T A C G T A C G T G T C A A C G T C T A G C A T G A C T G G A T C G C A T
C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:4
Score:0.79
Offset:-2
Orientation:reverse strand
Alignment:--TTTATGGGCT
TTTTTATTGG--
 A C G T A C G T A C G T A C G T A C G T G T C A A C G T C T A G C A T G A C T G G A T C G C A T
C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:5
Score:0.79
Offset:-2
Orientation:reverse strand
Alignment:--TTTATGGGCT
NTTTTATTGG--
 A C G T A C G T A C G T A C G T A C G T G T C A A C G T C T A G C A T G A C T G G A T C G C A T
C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G A C G T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:6
Score:0.78
Offset:-3
Orientation:reverse strand
Alignment:---TTTATGGGCT
DGWTTTATGRCN-
 A C G T A C G T A C G T A C G T A C G T A C G T G T C A A C G T C T A G C A T G A C T G G A T C G C A T
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C A C G T

CDX2/MA0465.1/Jaspar

Match Rank:7
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-TTTATGGGCT
TTTTATGGCTN
 A C G T A C G T A C G T A C G T G T C A A C G T C T A G C A T G A C T G G A T C G C A T
A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

PH0057.1_Hoxb13/Jaspar

Match Rank:8
Score:0.75
Offset:-5
Orientation:reverse strand
Alignment:-----TTTATGGGCT-
NNAATTTTATTGGNTN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A A C G T C T A G C A T G A C T G G A T C G C A T A C G T
A T G C C T A G C G T A C G T A A C G T C G A T C G A T G C A T C T G A G A C T C A G T C T A G T A C G C A T G G A C T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:9
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-TTTATGGGCT
TTTTATTGC--
 A C G T A C G T A C G T A C G T G T C A A C G T C T A G C A T G A C T G G A T C G C A T
C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:10
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-TTTATGGGCT
TTTAATTGCN-
 A C G T A C G T A C G T A C G T G T C A A C G T C T A G C A T G A C T G G A T C G C A T
C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C A C G T