Information for 11-GCCAAGATCA (Motif 19)

A C T G A G T C G T A C G T C A C G T A A C T G G T C A G A C T A G T C G T C A
Reverse Opposite:
A C G T A C T G C G T A A C G T G T A C A C G T A C G T A C T G A C T G A G T C
p-value:1e-11
log p-value:-2.562e+01
Information Content per bp:1.842
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif2.05%
Number of Background Sequences with motif10.5
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets63.8 +/- 22.2bp
Average Position of motif in Background49.8 +/- 21.3bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIX/MA0671.1/Jaspar

Match Rank:1
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---GCCAAGATCA
CGTGCCAAG----
 A C G T A C G T A C G T A C T G A G T C G T A C G T C A C G T A A C T G G T C A G A C T A G T C G T C A
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:2
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-GCCAAGATCA
TGCCAA-----
 A C G T A C T G A G T C G T A C G T C A C G T A A C T G G T C A G A C T A G T C G T C A
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---GCCAAGATCA
GGTGCCAAGT---
 A C G T A C G T A C G T A C T G A G T C G T A C G T C A C G T A A C T G G T C A G A C T A G T C G T C A
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:4
Score:0.69
Offset:0
Orientation:forward strand
Alignment:GCCAAGATCA
BTCAAGGTCA
 A C T G A G T C G T A C G T C A C G T A A C T G G T C A G A C T A G T C G T C A
A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.69
Offset:1
Orientation:forward strand
Alignment:GCCAAGATCA-
-CAAAGGTCAG
 A C T G A G T C G T A C G T C A C G T A A C T G G T C A G A C T A G T C G T C A A C G T
A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:6
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GCCAAGATCA-----
TGCCAAAATAAACANN
 A C G T A C T G A G T C G T A C G T C A C G T A A C T G G T C A G A C T A G T C G T C A A C G T A C G T A C G T A C G T A C G T
C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:7
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GCCAAGATCA
NTCAAGGTCA
 A C T G A G T C G T A C G T C A C G T A A C T G G T C A G A C T A G T C G T C A
A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A

PB0014.1_Esrra_1/Jaspar

Match Rank:8
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GCCAAGATCA-----
TATTCAAGGTCATGCGA
 A C G T A C G T A C T G A G T C G T A C G T C A C G T A A C T G G T C A G A C T A G T C G T C A A C G T A C G T A C G T A C G T A C G T
C A G T G T C A A C G T A G C T T A G C C T G A C T G A C A T G C A T G C A G T A G T C C T G A G C A T T C A G A G T C A C T G G T C A

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:GCCAAGATCA-
-TCAAGGTCAN
 A C T G A G T C G T A C G T C A C G T A A C T G G T C A G A C T A G T C G T C A A C G T
A C G T A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C

Mecom/MA0029.1/Jaspar

Match Rank:10
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GCCAAGATCA--
AAGATAAGATAACA
 A C G T A C G T A C T G A G T C G T A C G T C A C G T A A C T G G T C A G A C T A G T C G T C A A C G T A C G T
C T G A C G T A A C T G C G T A G A C T C G T A C T G A A C T G C G T A A G C T G C T A C T G A A C G T G T C A