Information for 4-CARARAAAAGTACACA (Motif 13)

G T A C C G T A C T A G C T G A C T A G G T C A C G T A C T G A C G T A C T A G G C A T G T C A G T A C C G T A A T G C C G T A
Reverse Opposite:
C G A T A T C G A C G T A C T G A C G T C G T A A G T C C G A T A G C T A C G T A C G T A G T C A G C T A G T C A C G T C A T G
p-value:1e-12
log p-value:-2.878e+01
Information Content per bp:1.802
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.17%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets47.9 +/- 24.9bp
Average Position of motif in Background36.4 +/- 0.5bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.67
Offset:6
Orientation:forward strand
Alignment:CARARAAAAGTACACA
------AAAGTAAACA
 G T A C C G T A C T A G C T G A C T A G G T C A C G T A C T G A C G T A C T A G G C A T G T C A G T A C C G T A A T G C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:2
Score:0.66
Offset:6
Orientation:forward strand
Alignment:CARARAAAAGTACACA
------AAAGTAAACA
 G T A C C G T A C T A G C T G A C T A G G T C A C G T A C T G A C G T A C T A G G C A T G T C A G T A C C G T A A T G C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A

FOXA1/MA0148.3/Jaspar

Match Rank:3
Score:0.65
Offset:5
Orientation:reverse strand
Alignment:CARARAAAAGTACACA----
-----CAAAGTAAACANNNN
 G T A C C G T A C T A G C T G A C T A G G T C A C G T A C T G A C G T A C T A G G C A T G T C A G T A C C G T A A T G C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G T A C G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C G C T A C G A T T A C G T C A G C T G A

Foxa2/MA0047.2/Jaspar

Match Rank:4
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:CARARAAAAGTACACA
----NCTAAGTAAACA
 G T A C C G T A C T A G C T G A C T A G G T C A C G T A C T G A C G T A C T A G G C A T G T C A G T A C C G T A A T G C C G T A
A C G T A C G T A C G T A C G T T A G C G T A C G C A T T C G A C G T A C T A G A G C T G T C A T G C A C G T A A G T C C G T A

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:5
Score:0.63
Offset:6
Orientation:reverse strand
Alignment:CARARAAAAGTACACA--
------TATGTAAACANG
 G T A C C G T A C T A G C T G A C T A G G T C A C G T A C T G A C G T A C T A G G C A T G T C A G T A C C G T A A T G C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T T C G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C T G A T A C G

FOXP1/MA0481.1/Jaspar

Match Rank:6
Score:0.62
Offset:4
Orientation:forward strand
Alignment:CARARAAAAGTACACA---
----CAAAAGTAAACAAAG
 G T A C C G T A C T A G C T G A C T A G G T C A C G T A C T G A C G T A C T A G G C A T G T C A G T A C C G T A A T G C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T A C G C T A C G T A T C G A C T G A T C A G G C A T C G T A C G T A C G T A T G A C C G T A T G C A C G T A T C A G

PB0015.1_Foxa2_1/Jaspar

Match Rank:7
Score:0.62
Offset:4
Orientation:forward strand
Alignment:CARARAAAAGTACACA-----
----AAAAAGTAAACAAAGAC
 G T A C C G T A C T A G C T G A C T A G G T C A C G T A C T G A C G T A C T A G G C A T G T C A G T A C C G T A A T G C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C T A C G T A G C T A C G T A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A G C T A C G T A T A C G C T G A A G T C

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:8
Score:0.62
Offset:6
Orientation:reverse strand
Alignment:CARARAAAAGTACACA
------WAAGTAAAYA
 G T A C C G T A C T A G C T G A C T A G G T C A C G T A C T G A C G T A C T A G G C A T G T C A G T A C C G T A A T G C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T G C A T T C G A C T G A T C A G A G C T G T C A G T C A C T G A A G T C T G C A

PB0134.1_Hnf4a_2/Jaspar

Match Rank:9
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CARARAAAAGTACACA--
--GGCAAAAGTCCAATAA
 G T A C C G T A C T A G C T G A C T A G G T C A C G T A C T G A C G T A C T A G G C A T G T C A G T A C C G T A A T G C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:10
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CARARAAAAGTACACA
CANAGNNCAAAGTCCA--
 A C G T A C G T G T A C C G T A C T A G C T G A C T A G G T C A C G T A C T G A C G T A C T A G G C A T G T C A G T A C C G T A A T G C C G T A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T A C G T