Information for 4-GCCAAGATWA (Motif 7)

C A T G A G T C G A T C C G T A C G T A T A C G T G C A G C A T G C A T G C T A
Reverse Opposite:
C G A T C G T A C G T A A C G T A T G C G C A T C G A T C T A G C T A G G T A C
p-value:1e-15
log p-value:-3.631e+01
Information Content per bp:1.562
Number of Target Sequences with motif209.0
Percentage of Target Sequences with motif26.29%
Number of Background Sequences with motif7051.0
Percentage of Background Sequences with motif15.03%
Average Position of motif in Targets47.8 +/- 25.9bp
Average Position of motif in Background49.8 +/- 30.8bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.1/Jaspar

Match Rank:1
Score:0.83
Offset:-1
Orientation:reverse strand
Alignment:-GCCAAGATWA
TGCCAA-----
 A C G T C A T G A G T C G A T C C G T A C G T A T A C G T G C A G C A T G C A T G C T A
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.82
Offset:-3
Orientation:forward strand
Alignment:---GCCAAGATWA
CGTGCCAAG----
 A C G T A C G T A C G T C A T G A G T C G A T C C G T A C G T A T A C G T G C A G C A T G C A T G C T A
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.76
Offset:-3
Orientation:forward strand
Alignment:---GCCAAGATWA
GGTGCCAAGT---
 A C G T A C G T A C G T C A T G A G T C G A T C C G T A C G T A T A C G T G C A G C A T G C A T G C T A
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T A C G T

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:4
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-GCCAAGATWA-----
TGCCAAAATAAACANN
 A C G T C A T G A G T C G A T C C G T A C G T A T A C G T G C A G C A T G C A T G C T A A C G T A C G T A C G T A C G T A C G T
C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--GCCAAGATWA
TTGCCAAG----
 A C G T A C G T C A T G A G T C G A T C C G T A C G T A T A C G T G C A G C A T G C A T G C T A
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:6
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GCCAAGATWA
ATGCCAACC---
 A C G T A C G T C A T G A G T C G A T C C G T A C G T A T A C G T G C A G C A T G C A T G C T A
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:7
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GCCAAGATWA
BTCAAGGTCA
 C A T G A G T C G A T C C G T A C G T A T A C G T G C A G C A T G C A T G C T A
A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A

YY2/MA0748.1/Jaspar

Match Rank:8
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----GCCAAGATWA
GTCCGCCATTA---
 A C G T A C G T A C G T A C G T C A T G A G T C G A T C C G T A C G T A T A C G T G C A G C A T G C A T G C T A
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T A C G T A C G T

Mecom/MA0029.1/Jaspar

Match Rank:9
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GCCAAGATWA--
AAGATAAGATAACA
 A C G T A C G T C A T G A G T C G A T C C G T A C G T A T A C G T G C A G C A T G C A T G C T A A C G T A C G T
C T G A C G T A A C T G C G T A G A C T C G T A C T G A A C T G C G T A A G C T G C T A C T G A A C G T G T C A

POL004.1_CCAAT-box/Jaspar

Match Rank:10
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----GCCAAGATWA
ACTAGCCAATCA--
 A C G T A C G T A C G T A C G T C A T G A G T C G A T C C G T A C G T A T A C G T G C A G C A T G C A T G C T A
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T