Information for 5-CTGCCAGATC (Motif 3)

A T G C C G A T A T C G T A G C T A G C C G T A T C A G G C T A G A C T G A T C
Reverse Opposite:
C T A G C G T A C G A T A G T C G C A T A T C G A T C G T A G C C G T A A T C G
p-value:1e-25
log p-value:-5.891e+01
Information Content per bp:1.591
Number of Target Sequences with motif253.0
Percentage of Target Sequences with motif32.52%
Number of Background Sequences with motif7765.4
Percentage of Background Sequences with motif16.94%
Average Position of motif in Targets50.8 +/- 26.3bp
Average Position of motif in Background49.5 +/- 32.4bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:1
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CTGCCAGATC
ATGCCAGACN
 A T G C C G A T A T C G T A G C T A G C C G T A T C A G G C T A G A C T G A T C
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CTGCCAGATC
TTGCCAAG--
 A T G C C G A T A T C G T A G C T A G C C G T A T C A G G C T A G A C T G A T C
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:3
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CTGCCAGATC--
GVACAGNMTGTYCTB
 A C G T A C G T A C G T A T G C C G A T A T C G T A G C T A G C C G T A T C A G G C T A G A C T G A T C A C G T A C G T
C T A G T C G A C G T A T A G C C G T A C A T G C G T A T G A C G C A T T A C G G A C T A G C T G A T C G A C T A C T G

Myb/MA0100.2/Jaspar

Match Rank:4
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CTGCCAGATC-
-TGGCAGTTGN
 A T G C C G A T A T C G T A G C T A G C C G T A T C A G G C T A G A C T G A T C A C G T
A C G T C G A T A C T G C T A G A G T C C G T A A C T G A G C T A C G T C T A G T C A G

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:5
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CTGCCAGATC
VBTGWCAGCB-
 A C G T A T G C C G A T A T C G T A G C T A G C C G T A T C A G G C T A G A C T G A T C
T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C A C G T

PH0140.1_Pknox1/Jaspar

Match Rank:6
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CTGCCAGATC---
GGATTGACAGGTCNTT
 A C G T A C G T A C G T A T G C C G A T A T C G T A G C T A G C C G T A T C A G G C T A G A C T G A T C A C G T A C G T A C G T
A C T G A C T G C G T A C G A T A C G T C T A G C G T A A G T C C T G A A C T G A T C G G A C T T A G C A C G T G A C T G C A T

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----CTGCCAGATC--
AGNACAGNCTGTTCTN
 A C G T A C G T A C G T A C G T A T G C C G A T A T C G T A G C T A G C C G T A T C A G G C T A G A C T G A T C A C G T A C G T
C T G A C T A G T C G A C G T A A T G C C G T A A T C G C G A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T A G C T

ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer

Match Rank:8
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CTGCCAGATC
ACTTCCGGTT-
 A C G T A T G C C G A T A T C G T A G C T A G C C G T A T C A G G C T A G A C T G A T C
T C G A A G T C G C A T C G A T A G T C A G T C A C T G A T C G G A C T A G C T A C G T

GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer

Match Rank:9
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CTGCCAGATC
ACTTCCGGTN-
 A C G T A T G C C G A T A T C G T A G C T A G C C G T A T C A G G C T A G A C T G A T C
T C G A A G T C G C A T G C A T A T G C A G T C A C T G A T C G A G C T A G C T A C G T

PB0154.1_Osr1_2/Jaspar

Match Rank:10
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----CTGCCAGATC-
ACATGCTACCTAATAC
 A C G T A C G T A C G T A C G T A C G T A T G C C G A T A T C G T A G C T A G C C G T A T C A G G C T A G A C T G A T C A C G T
C T G A G A T C G C T A G A C T T C A G G A T C A G C T C G T A G T A C G A T C G C A T T C G A G T C A C G A T G T C A T G A C