Information for 10-GACAAGTCCA (Motif 13)

A C T G G C T A A G T C C G T A C G T A C T A G A C G T G T A C A G T C G T C A
Reverse Opposite:
A C G T A C T G A C T G C G T A A G T C A C G T A C G T A C T G C A G T A G T C
p-value:1e-9
log p-value:-2.249e+01
Information Content per bp:1.926
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.93%
Number of Background Sequences with motif94.9
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets56.3 +/- 18.4bp
Average Position of motif in Background51.4 +/- 31.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0134.1_Hnf4a_2/Jaspar

Match Rank:1
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GACAAGTCCA----
GGCAAAAGTCCAATAA
 A C G T A C G T A C T G G C T A A G T C C G T A C G T A C T A G A C G T G T A C A G T C G T C A A C G T A C G T A C G T A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:2
Score:0.67
Offset:2
Orientation:forward strand
Alignment:GACAAGTCCA--
--CAAGGHCANV
 A C T G G C T A A G T C C G T A C G T A C T A G A C G T G T A C A G T C G T C A A C G T A C G T
A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

Hes2/MA0616.1/Jaspar

Match Rank:3
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----GACAAGTCCA
TAACGACACGTGC-
 A C G T A C G T A C G T A C G T A C T G G C T A A G T C C G T A C G T A C T A G A C G T G T A C A G T C G T C A
A C G T C G T A C G T A T A G C A T C G C T G A G T A C C T G A G T A C C T A G A C G T C T A G G T A C A C G T

Nr2e1/MA0676.1/Jaspar

Match Rank:4
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GACAAGTCCA
-AAAAGTCAA
 A C T G G C T A A G T C C G T A C G T A C T A G A C G T G T A C A G T C G T C A
A C G T G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:5
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GACAAGTCCA
BTCAAGGTCA
 A C T G G C T A A G T C C G T A C G T A C T A G A C G T G T A C A G T C G T C A
A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GACAAGTCCA
AAGGCAAGTGT-
 A C G T A C G T A C T G G C T A A G T C C G T A C G T A C T A G A C G T G T A C A G T C G T C A
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:7
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GACAAGTCCA
NTCAAGGTCA
 A C T G G C T A A G T C C G T A C G T A C T A G A C G T G T A C A G T C G T C A
A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A

MEIS1/MA0498.2/Jaspar

Match Rank:8
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GACAAGTCCA
TTGACAG-----
 A C G T A C G T A C T G G C T A A G T C C G T A C G T A C T A G A C G T G T A C A G T C G T C A
G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T A C G T A C G T A C G T A C G T

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:9
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---GACAAGTCCA
RHTGWCAR-----
 A C G T A C G T A C G T A C T G G C T A A G T C C G T A C G T A C T A G A C G T G T A C A G T C G T C A
C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A A C G T A C G T A C G T A C G T A C G T

PH0104.1_Meis2/Jaspar

Match Rank:10
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----GACAAGTCCA-
NTATTGACAGGTNNTN
 A C G T A C G T A C G T A C G T A C G T A C T G G C T A A G T C C G T A C G T A C T A G A C G T G T A C A G T C G T C A A C G T
C T A G C A G T G C T A C G A T G A C T C T A G C G T A A G T C C T G A A C T G A T C G G A C T T A G C A G C T G C A T C G A T