Information for 3-CTTGGCAGGA (Motif 4)

A T G C A G C T A G C T A C T G A C T G T A G C G T C A C A T G A C T G T G C A
Reverse Opposite:
A C G T T G A C G T A C C A G T A T C G A G T C G T A C T C G A T C G A T A C G
p-value:1e-16
log p-value:-3.830e+01
Information Content per bp:1.697
Number of Target Sequences with motif103.0
Percentage of Target Sequences with motif12.13%
Number of Background Sequences with motif2219.0
Percentage of Background Sequences with motif4.81%
Average Position of motif in Targets52.4 +/- 27.9bp
Average Position of motif in Background49.0 +/- 32.1bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.81
Offset:-1
Orientation:reverse strand
Alignment:-CTTGGCAGGA
NNTTGGCANN-
 A C G T A T G C A G C T A G C T A C T G A C T G T A G C G T C A C A T G A C T G T G C A
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:CTTGGCAGGA
CTTGGCAA--
 A T G C A G C T A G C T A C T G A C T G T A G C G T C A C A T G A C T G T G C A
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.79
Offset:0
Orientation:reverse strand
Alignment:CTTGGCAGGA
NTTGGCANN-
 A T G C A G C T A G C T A C T G A C T G T A G C G T C A C A T G A C T G T G C A
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.78
Offset:1
Orientation:forward strand
Alignment:CTTGGCAGGA
-TTGGCA---
 A T G C A G C T A G C T A C T G A C T G T A G C G T C A C A T G A C T G T G C A
A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:5
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-CTTGGCAGGA
GGTTGGCAT--
 A C G T A T G C A G C T A G C T A C T G A C T G T A G C G T C A C A T G A C T G T G C A
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:6
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-CTTGGCAGGA
NGTGGGCAT--
 A C G T A T G C A G C T A G C T A C T G A C T G T A G C G T C A C A T G A C T G T G C A
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---CTTGGCAGGA
WDNCTGGGCA---
 A C G T A C G T A C G T A T G C A G C T A G C T A C T G A C T G T A G C G T C A C A T G A C T G T G C A
G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T A C G T A C G T

E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer

Match Rank:8
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CTTGGCAGGA--
BTKGGCGGGAAA
 A T G C A G C T A G C T A C T G A C T G T A G C G T C A C A T G A C T G T G C A A C G T A C G T
A C T G A C G T C A T G A T C G A T C G T G A C A C T G A T C G A T C G T G C A C T G A C G T A

MEIS2/MA0774.1/Jaspar

Match Rank:9
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CTTGGCAGGA
-TTGACAGC-
 A T G C A G C T A G C T A C T G A C T G T A G C G T C A C A T G A C T G T G C A
A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T

THAP1/MA0597.1/Jaspar

Match Rank:10
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CTTGGCAGGA
TNNGGGCAG--
 A C G T A T G C A G C T A G C T A C T G A C T G T A G C G T C A C A T G A C T G T G C A
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T