Information for 1-CGSCATTVCG (Motif 6)

A G T C A C T G A T G C A T G C C T G A A C G T A C G T T G C A A T G C A C T G
Reverse Opposite:
A G T C A T C G A C G T G T C A C G T A A G C T A T C G A T C G A G T C A C T G
p-value:1e-10
log p-value:-2.413e+01
Information Content per bp:1.777
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif3.71%
Number of Background Sequences with motif366.1
Percentage of Background Sequences with motif0.76%
Average Position of motif in Targets47.9 +/- 29.3bp
Average Position of motif in Background51.3 +/- 30.0bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY2/MA0748.1/Jaspar

Match Rank:1
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---CGSCATTVCG
GTCCGCCATTA--
 A C G T A C G T A C G T A G T C A C T G A T G C A T G C C T G A A C G T A C G T T G C A A T G C A C T G
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T A C G T

Atf3/MA0605.1/Jaspar

Match Rank:2
Score:0.55
Offset:3
Orientation:forward strand
Alignment:CGSCATTVCG-
---GATGACGT
 A G T C A C T G A T G C A T G C C T G A A C G T A C G T T G C A A T G C A C T G A C G T
A C G T A C G T A C G T A T C G C T G A A C G T A C T G C G T A A G T C C T A G G A C T

Atf1/MA0604.1/Jaspar

Match Rank:3
Score:0.54
Offset:4
Orientation:forward strand
Alignment:CGSCATTVCG--
----ATGACGTA
 A G T C A C T G A T G C A T G C C T G A A C G T A C G T T G C A A T G C A C T G A C G T A C G T
A C G T A C G T A C G T A C G T T C G A G C A T A C T G C G T A A G T C C T A G G A C T T C G A

PB0108.1_Atf1_2/Jaspar

Match Rank:4
Score:0.54
Offset:-6
Orientation:reverse strand
Alignment:------CGSCATTVCG
NTTATTCGTCATNC--
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G A T G C A T G C C T G A A C G T A C G T T G C A A T G C A C T G
C A T G G C A T G C A T T C G A G A C T C A G T A G T C T A C G G A C T G A T C T C G A A G C T G A C T A T G C A C G T A C G T

PB0185.1_Tcf1_2/Jaspar

Match Rank:5
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----CGSCATTVCG
TTGCCCGGATTAGG
 A C G T A C G T A C G T A C G T A G T C A C T G A T G C A T G C C T G A A C G T A C G T T G C A A T G C A C T G
C G A T A C G T T C A G G A T C T A G C A G T C T A C G A C T G C T G A C A G T A C G T C G T A C A T G C T A G

PB0164.1_Smad3_2/Jaspar

Match Rank:6
Score:0.54
Offset:-7
Orientation:forward strand
Alignment:-------CGSCATTVCG
TACGCCCCGCCACTCTG
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G A T G C A T G C C T G A A C G T A C G T T G C A A T G C A C T G
C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G

Crem/MA0609.1/Jaspar

Match Rank:7
Score:0.53
Offset:3
Orientation:forward strand
Alignment:CGSCATTVCG---
---TATGACGTAA
 A G T C A C T G A T G C A T G C C T G A A C G T A C G T T G C A A T G C A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A A C G T A C T G C G T A A G T C A C T G A C G T G T C A C G T A

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:8
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CGSCATTVCG
NGGGATTA--
 A G T C A C T G A T G C A T G C C T G A A C G T A C G T T G C A A T G C A C T G
T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A A C G T A C G T

YY1(Zf)/Promoter/Homer

Match Rank:9
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--CGSCATTVCG
GCCGCCATCTTG
 A C G T A C G T A G T C A C T G A T G C A T G C C T G A A C G T A C G T T G C A A T G C A C T G
C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G

PITX3/MA0714.1/Jaspar

Match Rank:10
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:CGSCATTVCG
-GGGATTANN
 A G T C A C T G A T G C A T G C C T G A A C G T A C G T T G C A A T G C A C T G
A C G T C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G