Information for 1-CAGCWCCANGGACAGC (Motif 2)

A G T C C G T A A C T G G T A C C G T A A G T C A G T C T C G A G C A T A C T G A C T G G C T A A G T C C G T A A C T G A T G C
Reverse Opposite:
A T C G A G T C A C G T A C T G C G A T A G T C A G T C C G T A A G C T T A C G A C T G C G A T A C T G A G T C C G A T C T A G
p-value:1e-12
log p-value:-2.796e+01
Information Content per bp:1.801
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.37%
Number of Background Sequences with motif19.2
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets54.1 +/- 26.7bp
Average Position of motif in Background51.1 +/- 24.9bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:1
Score:0.87
Offset:-1
Orientation:reverse strand
Alignment:-CAGCWCCANGGACAGC---
TCAGCACCATGGACAGCTCC
 A C G T A G T C C G T A A C T G G T A C C G T A A G T C A G T C T C G A G C A T A C T G A C T G G C T A A G T C C G T A A C T G A T G C A C G T A C G T A C G T
A G C T G A T C C T G A T C A G T A G C C T G A A T G C G A T C G C T A G A C T C T A G C T A G G T C A A T G C C G T A T C A G G T A C C A G T T A G C G A T C

REST/MA0138.2/Jaspar

Match Rank:2
Score:0.87
Offset:-2
Orientation:forward strand
Alignment:--CAGCWCCANGGACAGC---
TTCAGCACCATGGACAGCGCC
 A C G T A C G T A G T C C G T A A C T G G T A C C G T A A G T C A G T C T C G A G C A T A C T G A C T G G C T A A G T C C G T A A C T G A T G C A C G T A C G T A C G T
C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.62
Offset:5
Orientation:forward strand
Alignment:CAGCWCCANGGACAGC
-----CAAAGGTCAG-
 A G T C C G T A A C T G G T A C C G T A A G T C A G T C T C G A G C A T A C T G A C T G G C T A A G T C C G T A A C T G A T G C
A C G T A C G T A C G T A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:4
Score:0.60
Offset:5
Orientation:forward strand
Alignment:CAGCWCCANGGACAGC
-----CCAGGAACAG-
 A G T C C G T A A C T G G T A C C G T A A G T C A G T C T C G A G C A T A C T G A C T G G C T A A G T C C G T A A C T G A T G C
A C G T A C G T A C G T A C G T A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:5
Score:0.57
Offset:10
Orientation:reverse strand
Alignment:CAGCWCCANGGACAGC
----------CACAGN
 A G T C C G T A A C T G G T A C C G T A A G T C A G T C T C G A G C A T A C T G A C T G G C T A A G T C C G T A A C T G A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:6
Score:0.56
Offset:6
Orientation:forward strand
Alignment:CAGCWCCANGGACAGC
------CAAGGHCANV
 A G T C C G T A A C T G G T A C C G T A A G T C A G T C T C G A G C A T A C T G A C T G G C T A A G T C C G T A A C T G A T G C
A C G T A C G T A C G T A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

MEIS2/MA0774.1/Jaspar

Match Rank:7
Score:0.55
Offset:8
Orientation:forward strand
Alignment:CAGCWCCANGGACAGC
--------TTGACAGC
 A G T C C G T A A C T G G T A C C G T A A G T C A G T C T C G A G C A T A C T G A C T G G C T A A G T C C G T A A C T G A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C

TFAP2C(var.3)/MA0815.1/Jaspar

Match Rank:8
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CAGCWCCANGGACAGC
-TGCCCTNAGGGCA--
 A G T C C G T A A C T G G T A C C G T A A G T C A G T C T C G A G C A T A C T G A C T G G C T A A G T C C G T A A C T G A T G C
A C G T G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:9
Score:0.55
Offset:6
Orientation:forward strand
Alignment:CAGCWCCANGGACAGC
------TRAGGTCA--
 A G T C C G T A A C T G G T A C C G T A A G T C A G T C T C G A G C A T A C T G A C T G G C T A A G T C C G T A A C T G A T G C
A C G T A C G T A C G T A C G T A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:10
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CAGCWCCANGGACAGC
-TGCCCNNAGGGCA--
 A G T C C G T A A C T G G T A C C G T A A G T C A G T C T C G A G C A T A C T G A C T G G C T A A G T C C G T A A C T G A T G C
A C G T G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A A C G T A C G T