Information for 3-CAGTAAYTTGGAACTG (Motif 3)

G T A C C G T A A C T G C G A T C G T A G T C A A G T C A G C T C A G T A C T G C T A G C T G A C T G A G A T C A C G T A C T G
Reverse Opposite:
G T A C C G T A C T A G A G C T A G C T A G T C A G T C G T C A C T G A C T A G A C G T A C G T G C T A G T A C C G A T A C T G
p-value:1e-14
log p-value:-3.261e+01
Information Content per bp:1.737
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.94%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets46.3 +/- 17.2bp
Average Position of motif in Background15.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:1
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CAGTAAYTTGGAACTG
--GWAAYHTGABMC--
 G T A C C G T A A C T G C G A T C G T A G T C A A G T C A G C T C A G T A C T G C T A G C T G A C T G A G A T C A C G T A C T G
A C G T A C G T A C T G C G A T G T C A C G T A A G T C G T A C G C A T A C T G C G T A A C G T G T A C G A T C A C G T A C G T

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:2
Score:0.55
Offset:2
Orientation:forward strand
Alignment:CAGTAAYTTGGAACTG
--GWAAYHTGAKMC--
 G T A C C G T A A C T G C G A T C G T A G T C A A G T C A G C T C A G T A C T G C T A G C T G A C T G A G A T C A C G T A C T G
A C G T A C G T C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C A C G T A C G T

SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer

Match Rank:3
Score:0.55
Offset:4
Orientation:forward strand
Alignment:CAGTAAYTTGGAACTG
----AAAGRGGAAGTG
 G T A C C G T A A C T G C G A T C G T A G T C A A G T C A G C T C A G T A C T G C T A G C T G A C T G A G A T C A C G T A C T G
A C G T A C G T A C G T A C G T C G T A C T G A C G T A C T A G T C G A C T A G A C T G C G T A C G T A T A C G A G C T A T C G

LBX1/MA0618.1/Jaspar

Match Rank:4
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CAGTAAYTTGGAACTG
--TTAATTAG------
 G T A C C G T A A C T G C G A T C G T A G T C A A G T C A G C T C A G T A C T G C T A G C T G A C T G A G A T C A C G T A C T G
A C G T A C G T C G A T A G C T C G T A C G T A A G C T C G A T C T G A A T C G A C G T A C G T A C G T A C G T A C G T A C G T

PB0159.1_Rfx4_2/Jaspar

Match Rank:5
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CAGTAAYTTGGAACTG
NNNGTAACTANGNNA--
 A C G T G T A C C G T A A C T G C G A T C G T A G T C A A G T C A G C T C A G T A C T G C T A G C T G A C T G A G A T C A C G T A C T G
A C G T A T G C A T C G A C T G G A C T G T C A C G T A G T A C A G C T G C T A C A T G A T C G T A C G C A G T C G T A A C G T A C G T

HOXA5/MA0158.1/Jaspar

Match Rank:6
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CAGTAAYTTGGAACTG
CACTAATT--------
 G T A C C G T A A C T G C G A T C G T A G T C A A G T C A G C T C A G T A C T G C T A G C T G A C T G A G A T C A C G T A C T G
G T A C C T G A A T G C C G A T C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ELF1/MA0473.2/Jaspar

Match Rank:7
Score:0.52
Offset:4
Orientation:forward strand
Alignment:CAGTAAYTTGGAACTG
----AACCCGGAAGTG
 G T A C C G T A A C T G C G A T C G T A G T C A A G T C A G C T C A G T A C T G C T A G C T G A C T G A G A T C A C G T A C T G
A C G T A C G T A C G T A C G T C G T A G C T A G T A C T A G C G T A C A C T G A C T G C T G A G C T A C T A G G A C T T C A G

ELF4/MA0641.1/Jaspar

Match Rank:8
Score:0.52
Offset:4
Orientation:forward strand
Alignment:CAGTAAYTTGGAACTG
----AACCCGGAAGTG
 G T A C C G T A A C T G C G A T C G T A G T C A A G T C A G C T C A G T A C T G C T A G C T G A C T G A G A T C A C G T A C T G
A C G T A C G T A C G T A C G T C G T A G C T A G T A C T A G C T G A C C T A G A C T G C G T A G T C A T C A G A G C T C T A G

PH0135.1_Phox2a/Jaspar

Match Rank:9
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---CAGTAAYTTGGAACTG
CAGCATTAATTAGTAG---
 A C G T A C G T A C G T G T A C C G T A A C T G C G A T C G T A G T C A A G T C A G C T C A G T A C T G C T A G C T G A C T G A G A T C A C G T A C T G
A G T C T C G A A C T G G T A C T C G A G A C T A G C T C G T A C T G A C G A T A C G T C T G A C T A G A G C T T C A G T A C G A C G T A C G T A C G T

Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:10
Score:0.51
Offset:2
Orientation:forward strand
Alignment:CAGTAAYTTGGAACTG------
--NTAATTDGCYAATTANNWWD
 G T A C C G T A A C T G C G A T C G T A G T C A A G T C A G C T C A G T A C T G C T A G C T G A C T G A G A T C A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A C T G A C T T C G A C G T A C G A T A G C T C T G A A C T G T G A C G A C T T C G A C G T A A C G T A G C T C T G A C T G A G T C A G C T A G C T A C G T A