Information for 2-TSTTAGTKAAAAATGA (Motif 2)

A C G T A T G C A G C T A C G T C T G A A T C G A C G T A C T G C G T A C T G A C G T A C G T A C G T A A C G T A C T G C T G A
Reverse Opposite:
A G C T A G T C G T C A A C G T C G A T C G A T A G C T A C G T G T A C C G T A A T G C A G C T C G T A C T G A A T C G G T C A
p-value:1e-14
log p-value:-3.426e+01
Information Content per bp:1.792
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.25%
Number of Background Sequences with motif5.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets55.8 +/- 23.5bp
Average Position of motif in Background43.5 +/- 34.3bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0091.1_Lhx1/Jaspar

Match Rank:1
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TSTTAGTKAAAAATGA
CGAATTAATTAATAATG-
 A C G T A C G T A C G T A T G C A G C T A C G T C T G A A T C G A C G T A C T G C G T A C T G A C G T A C G T A C G T A A C G T A C T G C T G A
T G A C T C A G C G T A C G T A G A C T G A C T T C G A C G T A C G A T A C G T C T G A C T G A G C A T G C T A G C T A G A C T A C T G A C G T

HMBOX1/MA0895.1/Jaspar

Match Rank:2
Score:0.59
Offset:1
Orientation:forward strand
Alignment:TSTTAGTKAAAAATGA
-ACTAGTTAAC-----
 A C G T A T G C A G C T A C G T C T G A A T C G A C G T A C T G C G T A C T G A C G T A C G T A C G T A A C G T A C T G C T G A
A C G T T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C A C G T A C G T A C G T A C G T A C G T

PH0167.1_Tcf1/Jaspar

Match Rank:3
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TSTTAGTKAAAAATGA
NTTTTAGTTAACNNAGN
 A C G T A C G T A T G C A G C T A C G T C T G A A T C G A C G T A C T G C G T A C T G A C G T A C G T A C G T A A C G T A C T G C T G A
T G C A G A C T G C A T A C G T G A C T C T G A A T C G G C A T C G A T C G T A C T G A T A G C A G C T T C G A T G C A T A C G C T A G

PH0101.1_Lmx1b/Jaspar

Match Rank:4
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TSTTAGTKAAAAATGA
NNAATTAATTAAAAANN-
 A C G T A C G T A C G T A T G C A G C T A C G T C T G A A T C G A C G T A C T G C G T A C T G A C G T A C G T A C G T A A C G T A C T G C T G A
T G A C C T G A G C T A C G T A A G C T G A C T G C T A C G T A G C A T C G A T C G T A C T G A C G T A G C T A G C T A G A T C A G C T A C G T

PB0001.1_Arid3a_1/Jaspar

Match Rank:5
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--TSTTAGTKAAAAATGA
GGGTTTAATTAAAATTC-
 A C G T A C G T A C G T A T G C A G C T A C G T C T G A A T C G A C G T A C T G C G T A C T G A C G T A C G T A C G T A A C G T A C T G C T G A
T A C G A C T G A C T G G C A T G A C T A G C T C T G A C G T A C G A T G A C T T C G A C T G A C G T A G T C A G A C T G C A T G A T C A C G T

PH0100.1_Lmx1a/Jaspar

Match Rank:6
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--TSTTAGTKAAAAATGA
CGAATTAATTAAAAACC-
 A C G T A C G T A C G T A T G C A G C T A C G T C T G A A T C G A C G T A C T G C G T A C T G A C G T A C G T A C G T A A C G T A C T G C T G A
T A G C T A C G G C T A C G T A G A C T G A C T C G T A C G T A C G A T C G A T C T G A C T G A C G T A G C T A G C T A G A T C A G T C A C G T

PB0176.1_Sox5_2/Jaspar

Match Rank:7
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:TSTTAGTKAAAAATGA--
---NNCTNAATTATGANN
 A C G T A T G C A G C T A C G T C T G A A T C G A C G T A C T G C G T A C T G A C G T A C G T A C G T A A C G T A C T G C T G A A C G T A C G T
A C G T A C G T A C G T G A C T G A T C A T G C A C G T G C A T C T G A C G T A C G A T A C G T G T C A G A C T T C A G G C T A C G A T G C T A

PB0081.1_Tcf1_1/Jaspar

Match Rank:8
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-TSTTAGTKAAAAATGA
NNNTTAGTTAACTNANN
 A C G T A C G T A T G C A G C T A C G T C T G A A T C G A C G T A C T G C G T A C T G A C G T A C G T A C G T A A C G T A C T G C T G A
G A C T C A G T G A C T A G C T G A C T C T G A T A C G G A C T C G A T C G T A C G T A A G T C A G C T C T G A T C G A C T A G A C G T

Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer

Match Rank:9
Score:0.54
Offset:4
Orientation:forward strand
Alignment:TSTTAGTKAAAAATGA-
----GGTTAAACATTAA
 A C G T A T G C A G C T A C G T C T G A A T C G A C G T A C T G C G T A C T G A C G T A C G T A C G T A A C G T A C T G C T G A A C G T
A C G T A C G T A C G T A C G T C T A G C T A G G C A T C G A T C T G A G T C A G C T A A T G C C G T A C A G T G A C T C G T A T G C A

PH0168.1_Hnf1b/Jaspar

Match Rank:10
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--TSTTAGTKAAAAATGA
ANNNCTAGTTAACNGNN-
 A C G T A C G T A C G T A T G C A G C T A C G T C T G A A T C G A C G T A C T G C G T A C T G A C G T A C G T A C G T A A C G T A C T G C T G A
C T G A T A G C C T A G T C A G A G T C G C A T T C G A C T A G C A G T C G A T C G T A C G T A A G T C T G C A C T A G T G A C G C A T A C G T