Information for 6-TMTTTATTGC (Motif 17)

C G A T T G C A A G C T A C G T A G C T G T C A A C G T A C G T A T C G T G A C
Reverse Opposite:
A C T G T A G C C G T A T G C A A C G T T C G A C G T A T C G A A C G T G C T A
p-value:1e-8
log p-value:-2.030e+01
Information Content per bp:1.658
Number of Target Sequences with motif68.0
Percentage of Target Sequences with motif10.62%
Number of Background Sequences with motif2342.8
Percentage of Background Sequences with motif4.81%
Average Position of motif in Targets48.1 +/- 26.7bp
Average Position of motif in Background50.7 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX1/MA0878.1/Jaspar

Match Rank:1
Score:0.77
Offset:1
Orientation:reverse strand
Alignment:TMTTTATTGC
-TTTTATTGC
 C G A T T G C A A G C T A C G T A G C T G T C A A C G T A C G T A T C G T G A C
A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C

PH0063.1_Hoxb8/Jaspar

Match Rank:2
Score:0.76
Offset:-2
Orientation:reverse strand
Alignment:--TMTTTATTGC----
TTTATTAATTGCNNGN
 A C G T A C G T C G A T T G C A A G C T A C G T A G C T G T C A A C G T A C G T A T C G T G A C A C G T A C G T A C G T A C G T
G C A T G A C T A C G T C T G A C G A T G C A T C G T A C G T A A C G T C A G T C T A G G A T C G T A C T C A G A T C G C G A T

HOXA10/MA0899.1/Jaspar

Match Rank:3
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:TMTTTATTGC-
NTTTTATTACN
 C G A T T G C A A G C T A C G T A G C T G T C A A C G T A C G T A T C G T G A C A C G T
C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C

Hoxd9/MA0913.1/Jaspar

Match Rank:4
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:TMTTTATTGC
TTTTTATTGC
 C G A T T G C A A G C T A C G T A G C T G T C A A C G T A C G T A T C G T G A C
C G A T G C A T C A G T C G A T C G A T C G T A G A C T A C G T C T A G A G T C

CDX2/MA0465.1/Jaspar

Match Rank:5
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:TMTTTATTGC--
-TTTTATGGCTN
 C G A T T G C A A G C T A C G T A G C T G T C A A C G T A C G T A T C G T G A C A C G T A C G T
A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

HOXA13/MA0650.1/Jaspar

Match Rank:6
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:TMTTTATTGC
TTTTTATTGG
 C G A T T G C A A G C T A C G T A G C T G T C A A C G T A C G T A T C G T G A C
C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G

ISL2/MA0914.1/Jaspar

Match Rank:7
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:TMTTTATTGC
--TTAAGTGC
 C G A T T G C A A G C T A C G T A G C T G T C A A C G T A C G T A T C G T G A C
A C G T A C G T G A C T C G A T C T G A G C T A C A T G C G A T C T A G A T G C

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:8
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:TMTTTATTGC
NTTTTATGAC
 C G A T T G C A A G C T A C G T A G C T G T C A A C G T A C G T A T C G T G A C
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C

PH0013.1_Cdx2/Jaspar

Match Rank:9
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--TMTTTATTGC----
NAATTTTATTACCNNN
 A C G T A C G T C G A T T G C A A G C T A C G T A G C T G T C A A C G T A C G T A T C G T G A C A C G T A C G T A C G T A C G T
C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T

Dux/MA0611.1/Jaspar

Match Rank:10
Score:0.72
Offset:2
Orientation:reverse strand
Alignment:TMTTTATTGC
--TTGATTGN
 C G A T T G C A A G C T A C G T A G C T G T C A A C G T A C G T A T C G T G A C
A C G T A C G T G A C T A C G T A C T G C G T A A C G T A C G T C T A G A T C G