Information for 12-TTATGCTTAGCAA (Motif 26)

A C G T C G A T C G T A C G A T A C T G G T A C A C G T A C G T C G T A A C T G A G T C C G T A C G T A
Reverse Opposite:
A C G T A C G T A C T G A G T C C G A T C G T A C G T A A C T G A G T C C G T A A C G T C G T A G T C A
p-value:1e-7
log p-value:-1.835e+01
Information Content per bp:1.931
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.75%
Number of Background Sequences with motif5.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets60.0 +/- 22.2bp
Average Position of motif in Background56.9 +/- 20.8bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0054.1_Rfx3_1/Jaspar

Match Rank:1
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--TTATGCTTAGCAA--------
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T A C G T C G A T C G T A C G A T A C T G G T A C A C G T A C G T C G T A A C T G A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:2
Score:0.67
Offset:2
Orientation:forward strand
Alignment:TTATGCTTAGCAA----
--CCGCATAGCAACGGA
 A C G T C G A T C G T A C G A T A C T G G T A C A C G T A C G T C G T A A C T G A G T C C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

PB0055.1_Rfx4_1/Jaspar

Match Rank:3
Score:0.64
Offset:2
Orientation:forward strand
Alignment:TTATGCTTAGCAA----
--TACCATAGCAACGGT
 A C G T C G A T C G T A C G A T A C T G G T A C A C G T A C G T C G T A A C T G A G T C C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.63
Offset:4
Orientation:forward strand
Alignment:TTATGCTTAGCAA---
----SCCTAGCAACAG
 A C G T C G A T C G T A C G A T A C T G G T A C A C G T A C G T C G T A A C T G A G T C C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

PH0148.1_Pou3f3/Jaspar

Match Rank:5
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----TTATGCTTAGCAA
TNNATTATGCATANNTT
 A C G T A C G T A C G T A C G T A C G T C G A T C G T A C G A T A C T G G T A C A C G T A C G T C G T A A C T G A G T C C G T A C G T A
G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:6
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TTATGCTTAGCAA--
TGTTKCCTAGCAACM
 A C G T C G A T C G T A C G A T A C T G G T A C A C G T A C G T C G T A A C T G A G T C C G T A C G T A A C G T A C G T
C A G T T C A G A G C T G A C T A C G T A G T C G A T C G A C T C T G A A C T G G A T C C G T A C T G A A G T C G T A C

PB0022.1_Gata5_1/Jaspar

Match Rank:7
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:TTATGCTTAGCAA----
NTNTTCTTATCAGTNTN
 A C G T C G A T C G T A C G A T A C T G G T A C A C G T A C G T C G T A A C T G A G T C C G T A C G T A A C G T A C G T A C G T A C G T
G C T A G C A T G T A C A G C T A G C T A T G C C G A T C G A T C G T A A C G T A G T C C G T A T C A G G A C T G C A T G C A T C G T A

PB0023.1_Gata6_1/Jaspar

Match Rank:8
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:TTATGCTTAGCAA----
NNANTCTTATCTNNNNN
 A C G T C G A T C G T A C G A T A C T G G T A C A C G T A C G T C G T A A C T G A G T C C G T A C G T A A C G T A C G T A C G T A C G T
A G T C C G T A G C T A G A C T A C G T A T G C C G A T C G A T C T G A C G A T G T A C C G A T G T A C A C G T G C T A C A G T G C T A

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:9
Score:0.55
Offset:1
Orientation:forward strand
Alignment:TTATGCTTAGCAA
-TATGCWAATBAV
 A C G T C G A T C G T A C G A T A C T G G T A C A C G T A C G T C G T A A C T G A G T C C G T A C G T A
A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

NFIA/MA0670.1/Jaspar

Match Rank:10
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:TTATGCTTAGCAA-
----NNTTGGCANN
 A C G T C G A T C G T A C G A T A C T G G T A C A C G T A C G T C G T A A C T G A G T C C G T A C G T A A C G T
A C G T A C G T A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C