Information for 6-TATKCAMMRTGAT (Motif 14)

A C G T C G T A A C G T A C G T A G T C C G T A G T A C G T A C C T A G A C G T A C T G C G T A A C G T
Reverse Opposite:
C G T A A C G T G T A C C G T A A G T C A C T G A C T G C G A T A C T G G T C A C G T A A C G T C G T A
p-value:1e-9
log p-value:-2.290e+01
Information Content per bp:1.873
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.75%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets46.6 +/- 31.3bp
Average Position of motif in Background52.6 +/- 16.3bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---TATKCAMMRTGAT
GHATATKCAT------
 A C G T A C G T A C G T A C G T C G T A A C G T A C G T A G T C C G T A G T A C G T A C C T A G A C G T A C T G C G T A A C G T
C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---TATKCAMMRTGAT
GAATATTCAT------
 A C G T A C G T A C G T A C G T C G T A A C G T A C G T A G T C C G T A G T A C G T A C C T A G A C G T A C T G C G T A A C G T
T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T A C G T A C G T A C G T A C G T A C G T A C G T

PH0148.1_Pou3f3/Jaspar

Match Rank:3
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----TATKCAMMRTGAT
AAAATATGCATAATAAA
 A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T A G T C C G T A G T A C G T A C C T A G A C G T A C T G C G T A A C G T
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A

Esrra/MA0592.2/Jaspar

Match Rank:4
Score:0.56
Offset:2
Orientation:forward strand
Alignment:TATKCAMMRTGAT
--TTCAAGGTCAT
 A C G T C G T A A C G T A C G T A G T C C G T A G T A C G T A C C T A G A C G T A C T G C G T A A C G T
A C G T A C G T A C G T G A C T T A G C C T G A C T G A A C T G A C T G A C G T A T G C T C G A G C A T

POU2F1/MA0785.1/Jaspar

Match Rank:5
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--TATKCAMMRTGAT
AATATGCAAATT---
 A C G T A C G T A C G T C G T A A C G T A C G T A G T C C G T A G T A C G T A C C T A G A C G T A C T G C G T A A C G T
G C T A C G T A G A C T C G T A A G C T C A T G A G T C C G T A C T G A C G T A C G A T C A G T A C G T A C G T A C G T

Pax2/MA0067.1/Jaspar

Match Rank:6
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:TATKCAMMRTGAT-
------NCGTGACN
 A C G T C G T A A C G T A C G T A G T C C G T A G T A C G T A C C T A G A C G T A C T G C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-TATKCAMMRTGAT
ATATGCAAAT----
 A C G T A C G T C G T A A C G T A C G T A G T C C G T A G T A C G T A C C T A G A C G T A C T G C G T A A C G T
G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-TATKCAMMRTGAT
TTATGCAAAT----
 A C G T A C G T C G T A A C G T A C G T A G T C C G T A G T A C G T A C C T A G A C G T A C T G C G T A A C G T
C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T A C G T

POU5F1B/MA0792.1/Jaspar

Match Rank:9
Score:0.54
Offset:0
Orientation:forward strand
Alignment:TATKCAMMRTGAT
TATGCAAAT----
 A C G T C G T A A C G T A C G T A G T C C G T A G T A C G T A C C T A G A C G T A C T G C G T A A C G T
G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T A C G T A C G T A C G T A C G T

PH0144.1_Pou2f2/Jaspar

Match Rank:10
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---TATKCAMMRTGAT
TTGTATGCAAATTAGA
 A C G T A C G T A C G T A C G T C G T A A C G T A C G T A G T C C G T A G T A C G T A C C T A G A C G T A C T G C G T A A C G T
A G C T G C A T C A T G G C A T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A C T A G T G C A