Information for 3-AGGAKGTTAATCCGGR (Motif 5)

C T G A T C A G A T C G C T G A A C G T C T A G A C G T C G A T G T C A C G T A C G A T T A G C G A T C C A T G C T A G C T A G
Reverse Opposite:
G A T C A G T C G T A C C T A G A T C G C G T A C G A T A C G T C G T A G T C A A G T C G T C A A G C T A T G C A G T C A G C T
p-value:1e-10
log p-value:-2.524e+01
Information Content per bp:1.695
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif2.27%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets49.2 +/- 19.1bp
Average Position of motif in Background40.3 +/- 14.9bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OTX2/MA0712.1/Jaspar

Match Rank:1
Score:0.58
Offset:6
Orientation:forward strand
Alignment:AGGAKGTTAATCCGGR
------TTAATCCT--
 C T G A T C A G A T C G C T G A A C G T C T A G A C G T C G A T G T C A C G T A C G A T T A G C G A T C C A T G C T A G C T A G
A C G T A C G T A C G T A C G T A C G T A C G T G A C T G C A T C G T A C G T A C A G T G A T C A G T C A C G T A C G T A C G T

Arid3b/MA0601.1/Jaspar

Match Rank:2
Score:0.57
Offset:3
Orientation:forward strand
Alignment:AGGAKGTTAATCCGGR
---ATATTAATTAA--
 C T G A T C A G A T C G C T G A A C G T C T A G A C G T C G A T G T C A C G T A C G A T T A G C G A T C C A T G C T A G C T A G
A C G T A C G T A C G T C G T A C G A T G C T A C G A T A C G T C G T A C G T A C G A T G C A T C G T A C G T A A C G T A C G T

OTX1/MA0711.1/Jaspar

Match Rank:3
Score:0.57
Offset:6
Orientation:forward strand
Alignment:AGGAKGTTAATCCGGR
------TTAATCCG--
 C T G A T C A G A T C G C T G A A C G T C T A G A C G T C G A T G T C A C G T A C G A T T A G C G A T C C A T G C T A G C T A G
A C G T A C G T A C G T A C G T A C G T A C G T G A C T G C A T C G T A C G T A C A G T T A G C A T G C A T C G A C G T A C G T

PB0185.1_Tcf1_2/Jaspar

Match Rank:4
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:AGGAKGTTAATCCGGR---
-----NNTAATCCNGNCNN
 C T G A T C A G A T C G C T G A A C G T C T A G A C G T C G A T G T C A C G T A C G A T T A G C G A T C C A T G C T A G C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A T C G T A C G C A T T G C A G T C A G A C T G T A C A G T C T C A G A T C G C T A G A G T C T G C A C G T A

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.56
Offset:2
Orientation:forward strand
Alignment:AGGAKGTTAATCCGGR
--TATGCWAATBAV--
 C T G A T C A G A T C G C T G A A C G T C T A G A C G T C G A T G T C A C G T A C G A T T A G C G A T C C A T G C T A G C T A G
A C G T A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G A C G T A C G T

PH0151.1_Pou6f1_1/Jaspar

Match Rank:6
Score:0.54
Offset:2
Orientation:forward strand
Alignment:AGGAKGTTAATCCGGR---
--GACGATAATGAGCTTGC
 C T G A T C A G A T C G C T G A A C G T C T A G A C G T C G A T G T C A C G T A C G A T T A G C G A T C C A T G C T A G C T A G A C G T A C G T A C G T
A C G T A C G T T A C G G C T A T G A C T A C G G C T A C G A T C G T A C G T A A C G T C A T G C G T A A C T G A T C G G C A T C A G T C T A G G T A C

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:7
Score:0.54
Offset:2
Orientation:forward strand
Alignment:AGGAKGTTAATCCGGR
--WATGCAAATGAG--
 C T G A T C A G A T C G C T G A A C G T C T A G A C G T C G A T G T C A C G T A C G A T T A G C G A T C C A T G C T A G C T A G
A C G T A C G T G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G A C G T A C G T

Pitx1/MA0682.1/Jaspar

Match Rank:8
Score:0.54
Offset:6
Orientation:forward strand
Alignment:AGGAKGTTAATCCGGR
------TTAATCCC--
 C T G A T C A G A T C G C T G A A C G T C T A G A C G T C G A T G T C A C G T A C G A T T A G C G A T C C A T G C T A G C T A G
A C G T A C G T A C G T A C G T A C G T A C G T G A C T G C A T T C G A C G T A C A G T G A T C G A T C G T A C A C G T A C G T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:9
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:AGGAKGTTAATCCGGR
------YTAATCCY--
 C T G A T C A G A T C G C T G A A C G T C T A G A C G T C G A T G T C A C G T A C G A T T A G C G A T C C A T G C T A G C T A G
A C G T A C G T A C G T A C G T A C G T A C G T G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C A C G T A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:10
Score:0.53
Offset:5
Orientation:forward strand
Alignment:AGGAKGTTAATCCGGR
-----GCTAATCC---
 C T G A T C A G A T C G C T G A A C G T C T A G A C G T C G A T G T C A C G T A C G A T T A G C G A T C C A T G C T A G C T A G
A C G T A C G T A C G T A C G T A C G T A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T A C G T