Information for 4-CTGTGTTTGKAAGAAA (Motif 9)

A G T C C G A T A C T G A C G T A T C G G C A T A C G T C G A T C T A G A C T G G T C A C T G A A C T G G T C A C G T A C T G A
Reverse Opposite:
A G C T A C G T C A G T G T A C A G C T A C G T T G A C A G T C C G T A T G C A C G T A A T G C C G T A T A G C C G T A T A C G
p-value:1e-9
log p-value:-2.265e+01
Information Content per bp:1.740
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.49%
Number of Background Sequences with motif17.1
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets56.5 +/- 19.1bp
Average Position of motif in Background47.9 +/- 37.1bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:1
Score:0.59
Offset:8
Orientation:forward strand
Alignment:CTGTGTTTGKAAGAAA--
--------GTCATAAAAN
 A G T C C G A T A C T G A C G T A T C G G C A T A C G T C G A T C T A G A C T G G T C A C T G A A C T G G T C A C G T A C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

PB0187.1_Tcf7_2/Jaspar

Match Rank:2
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CTGTGTTTGKAAGAAA-
--NNNTTTNTAATACNG
 A G T C C G A T A C T G A C G T A T C G G C A T A C G T C G A T C T A G A C T G G T C A C T G A A C T G G T C A C G T A C T G A A C G T
A C G T A C G T C G A T C A G T C T A G C A G T C A G T C G A T T G C A A G C T G T C A C G T A C G A T C G T A G T A C T C A G C A T G

CDX1/MA0878.1/Jaspar

Match Rank:3
Score:0.56
Offset:8
Orientation:forward strand
Alignment:CTGTGTTTGKAAGAAA-
--------GCAATAAAA
 A G T C C G A T A C T G A C G T A T C G G C A T A C G T C G A T C T A G A C T G G T C A C T G A A C T G G T C A C G T A C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A

CDX2/MA0465.1/Jaspar

Match Rank:4
Score:0.56
Offset:6
Orientation:forward strand
Alignment:CTGTGTTTGKAAGAAA-
------AAGCCATAAAA
 A G T C C G A T A C T G A C G T A T C G G C A T A C G T C G A T C T A G A C T G G T C A C T G A A C T G G T C A C G T A C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A

STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer

Match Rank:5
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:CTGTGTTTGKAAGAAA-
-----TTTCTNAGAAAN
 A G T C C G A T A C T G A C G T A T C G G C A T A C G T C G A T C T A G A C T G G T C A C T G A A C T G G T C A C G T A C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C G T A G T C G A C T G C T A C T G A A C T G C G T A C G T A T G C A G A C T

HOXA10/MA0899.1/Jaspar

Match Rank:6
Score:0.55
Offset:7
Orientation:forward strand
Alignment:CTGTGTTTGKAAGAAA--
-------GGTAATAAAAA
 A G T C C G A T A C T G A C G T A T C G G C A T A C G T C G A T C T A G A C T G G T C A C T G A A C T G G T C A C G T A C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A

PB0016.1_Foxj1_1/Jaspar

Match Rank:7
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---CTGTGTTTGKAAGAAA
NNNNTTTGTTTACNNT---
 A C G T A C G T A C G T A G T C C G A T A C T G A C G T A T C G G C A T A C G T C G A T C T A G A C T G G T C A C T G A A C T G G T C A C G T A C T G A
G T C A G T C A G C A T C A G T G C A T C A G T C G A T C T A G C G A T C G A T C A G T C T G A A G T C C G A T G C A T C G A T A C G T A C G T A C G T

Hoxd9/MA0913.1/Jaspar

Match Rank:8
Score:0.53
Offset:8
Orientation:forward strand
Alignment:CTGTGTTTGKAAGAAA--
--------GCAATAAAAA
 A G T C C G A T A C T G A C G T A T C G G C A T A C G T C G A T C T A G A C T G G T C A C T G A A C T G G T C A C G T A C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G G A T C T G C A C T G A C G A T G C T A G C T A G C T A C G T A G C T A

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:9
Score:0.52
Offset:7
Orientation:forward strand
Alignment:CTGTGTTTGKAAGAAA---
-------NGYCATAAAWCH
 A G T C C G A T A C T G A C G T A T C G G C A T A C G T C G A T C T A G A C T G G T C A C T G A A C T G G T C A C G T A C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer

Match Rank:10
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:CTGTGTTTGKAAGAAA--
----ATTTCCNGGAAATN
 A G T C C G A T A C T G A C G T A T C G G C A T A C G T C G A T C T A G A C T G G T C A C T G A A C T G G T C A C G T A C T G A A C G T A C G T
A C G T A C G T A C G T A C G T C T G A G A C T A C G T A C G T G T A C G A T C G C T A C T A G C A T G C G T A C G T A C T G A G A C T T A C G