Information for 2-AACACWCAGGCAC (Motif 4)

C G T A C G T A A T G C C G T A G T A C C G A T A T G C C G T A A C T G A C T G G T A C G T C A A G T C
Reverse Opposite:
A C T G A C G T A C T G A G T C A G T C A C G T A T C G C G T A C A T G A C G T A T C G A C G T A C G T
p-value:1e-12
log p-value:-2.941e+01
Information Content per bp:1.856
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif2.67%
Number of Background Sequences with motif9.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets46.4 +/- 23.7bp
Average Position of motif in Background61.2 +/- 25.0bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----AACACWCAGGCAC---
AGTAAACAAAAAAGAACANN
 A C G T A C G T A C G T A C G T C G T A C G T A A T G C C G T A G T A C C G A T A T G C C G T A A C T G A C T G G T A C G T C A A G T C A C G T A C G T A C G T
C G T A C T A G G A C T G T C A G T C A C G T A A G T C C G T A T C G A T C G A T C G A C G T A C T G A C T A G G C T A C G T A T A G C C G T A C G A T C G T A

MF0011.1_HMG_class/Jaspar

Match Rank:2
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:AACACWCAGGCAC
AACAAT-------
 C G T A C G T A A T G C C G T A G T A C C G A T A T G C C G T A A C T G A C T G G T A C G T C A A G T C
T C G A C G T A G A T C C T G A T G C A C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox5/MA0087.1/Jaspar

Match Rank:3
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-AACACWCAGGCAC
NAACAAT-------
 A C G T C G T A C G T A A T G C C G T A G T A C C G A T A T G C C G T A A C T G A C T G G T A C G T C A A G T C
G C A T C G T A C T G A A G T C C G T A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0062.1_Sox12_1/Jaspar

Match Rank:4
Score:0.55
Offset:-6
Orientation:reverse strand
Alignment:------AACACWCAGGCAC
NTTNAGAACAATTA-----
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A T G C C G T A G T A C C G A T A T G C C G T A A C T G A C T G G T A C G T C A A G T C
C A T G C G A T C G A T C A G T C G T A A C T G C T G A G C T A A G T C G C T A C G T A G C A T C G A T C T G A A C G T A C G T A C G T A C G T A C G T

SRY/MA0084.1/Jaspar

Match Rank:5
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---AACACWCAGGCAC
GTAAACAAT-------
 A C G T A C G T A C G T C G T A C G T A A T G C C G T A G T A C C G A T A T G C C G T A A C T G A C T G G T A C G T C A A G T C
A C T G C G A T C G T A C G T A C G T A A G T C C G T A C T G A C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0016.1_Foxj1_1/Jaspar

Match Rank:6
Score:0.53
Offset:-6
Orientation:forward strand
Alignment:------AACACWCAGGCAC
AAAGTAAACAAAAATT---
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A T G C C G T A G T A C C G A T A T G C C G T A A C T G A C T G G T A C G T C A A G T C
G C T A C G A T G C T A C T A G G A C T G T C A G C T A C G T A G A T C C G T A G T C A C G T A G T C A C G T A C A G T C A G T A C G T A C G T A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:7
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----AACACWCAGGCAC
AGAAGAACAAAGGACTA-
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A A T G C C G T A G T A C C G A T A T G C C G T A A C T G A C T G G T A C G T C A A G T C
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:8
Score:0.52
Offset:5
Orientation:forward strand
Alignment:AACACWCAGGCAC--
-----CCAGGAACAG
 C G T A C G T A A T G C C G T A G T A C C G A T A T G C C G T A A C T G A C T G G T A C G T C A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:9
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-AACACWCAGGCAC
AGCCACTCAAG---
 A C G T C G T A C G T A A T G C C G T A G T A C C G A T A T G C C G T A A C T G A C T G G T A C G T C A A G T C
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T A C G T A C G T

Foxd3/MA0041.1/Jaspar

Match Rank:10
Score:0.52
Offset:-5
Orientation:reverse strand
Alignment:-----AACACWCAGGCAC
AAACAAACATTC------
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A A T G C C G T A G T A C C G A T A T G C C G T A A C T G A C T G G T A C G T C A A G T C
C T G A T G C A C T G A G A T C G T C A C G T A C G T A G A T C C T G A C G A T C G A T G A T C A C G T A C G T A C G T A C G T A C G T A C G T