Information for 6-CAGYACAGSACAA (Motif 10)

A G T C C G T A A C T G A G T C G T C A A G T C C G T A A C T G A T C G C T G A A G T C C G T A C G T A
Reverse Opposite:
C G A T A C G T A C T G A G C T A T G C A G T C A C G T A C T G A C G T C T A G A G T C A C G T A C T G
p-value:1e-10
log p-value:-2.516e+01
Information Content per bp:1.915
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.91%
Number of Background Sequences with motif3.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets50.2 +/- 30.1bp
Average Position of motif in Background55.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CAGYACAGSACAA
---CACAGN----
 A G T C C G T A A C T G A G T C G T C A A G T C C G T A A C T G A T C G C T G A A G T C C G T A C G T A
A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:2
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:CAGYACAGSACAA---
------RNAACAATGG
 A G T C C G T A A C T G A G T C G T C A A G T C C G T A A C T G A T C G C T G A A G T C C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G

Sox6/MA0515.1/Jaspar

Match Rank:3
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:CAGYACAGSACAA---
------AAAACAATGG
 A G T C C G T A A C T G A G T C G T C A A G T C C G T A A C T G A T C G C T G A A G T C C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:4
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---CAGYACAGSACAA
GGTCANYTGAGGWCA-
 A C G T A C G T A C G T A G T C C G T A A C T G A G T C G T C A A G T C C G T A A C T G A T C G C T G A A G T C C G T A C G T A
C T A G C A T G A C G T A G T C G C T A A G C T A G T C A G C T T C A G C T G A A C T G C A T G G C A T A T G C C G T A A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--CAGYACAGSACAA
CCAGGAACAG-----
 A C G T A C G T A G T C C G T A A C T G A G T C G T C A A G T C C G T A A C T G A T C G C T G A A G T C C G T A C G T A
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T A C G T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:6
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--CAGYACAGSACAA-
CGAAGCACACAAAATA
 A C G T A C G T A G T C C G T A A C T G A G T C G T C A A G T C C G T A A C T G A T C G C T G A A G T C C G T A C G T A A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

Sox17/MA0078.1/Jaspar

Match Rank:7
Score:0.53
Offset:8
Orientation:reverse strand
Alignment:CAGYACAGSACAA----
--------GACAATGNN
 A G T C C G T A A C T G A G T C G T C A A G T C C G T A A C T G A T C G C T G A A G T C C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:8
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:CAGYACAGSACAA---
------VRRACAAWGG
 A G T C C G T A A C T G A G T C G T C A A G T C C G T A A C T G A T C G C T G A A G T C C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G

PB0183.1_Sry_2/Jaspar

Match Rank:9
Score:0.52
Offset:2
Orientation:forward strand
Alignment:CAGYACAGSACAA------
--TCACGGAACAATAGGTG
 A G T C C G T A A C T G A G T C G T C A A G T C C G T A A C T G A T C G C T G A A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A C T G A T C C G T A G T A C C A T G T C A G T G C A C G T A A G T C C T G A C G T A G C A T C T G A C T A G T C A G G A C T T A C G

Sox3/MA0514.1/Jaspar

Match Rank:10
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:CAGYACAGSACAA---
------AAAACAAAGG
 A G T C C G T A A C T G A G T C G T C A A G T C C G T A A C T G A T C G C T G A A G T C C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G