Information for 8-CCTCCATTGA (Motif 32)

A G T C A G T C A C G T A G T C G T A C C G T A A C G T A C G T A C T G C G T A
Reverse Opposite:
A C G T A G T C C G T A C G T A A C G T A C T G A C T G C G T A A C T G A C T G
p-value:1e-4
log p-value:-9.821e+00
Information Content per bp:1.957
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets52.8 +/- 30.1bp
Average Position of motif in Background47.7 +/- 16.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0028.1_Hbp1_1/Jaspar

Match Rank:1
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--CCTCCATTGA----
NNCATTCATTCATNNN
 A C G T A C G T A G T C A G T C A C G T A G T C G T A C C G T A A C G T A C G T A C T G C G T A A C G T A C G T A C G T A C G T
T C G A G A C T G T A C C G T A A G C T G A C T T G A C C G T A C G A T G C A T A T G C C G T A C G A T G C T A A C T G C G A T

YY2/MA0748.1/Jaspar

Match Rank:2
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CCTCCATTGA
GTCCGCCATTA-
 A C G T A C G T A G T C A G T C A C G T A G T C G T A C C G T A A C G T A C G T A C T G C G T A
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T

SOX9/MA0077.1/Jaspar

Match Rank:3
Score:0.64
Offset:3
Orientation:forward strand
Alignment:CCTCCATTGA--
---CCATTGTTC
 A G T C A G T C A C G T A G T C G T A C C G T A A C G T A C G T A C T G C G T A A C G T A C G T
A C G T A C G T A C G T A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:4
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:CCTCCATTGA-----
-----ATTGATTYND
 A G T C A G T C A C G T A G T C G T A C C G T A A C G T A C G T A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A A C G T A G C T A T C G G T C A A G C T G A C T A G C T T G A C C G A T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:5
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CCTCCATTGA---
---CCATTGTTYB
 A G T C A G T C A C G T A G T C G T A C C G T A A C G T A C G T A C T G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

PB0005.1_Bbx_1/Jaspar

Match Rank:6
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CCTCCATTGA----
NANTTCATTGAATTA
 A C G T A G T C A G T C A C G T A G T C G T A C C G T A A C G T A C G T A C T G C G T A A C G T A C G T A C G T A C G T
G A T C C G T A T A G C C G A T C G A T T G A C G C T A G C A T C G A T A C T G C G T A G C T A G A C T C G A T C G T A

PB0168.1_Sox14_2/Jaspar

Match Rank:7
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CCTCCATTGA-----
NNNCCATTGTGTNAN
 A G T C A G T C A C G T A G T C G T A C C G T A A C G T A C G T A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A T C G T G A C A C T G A G T C G A T C C G T A A C G T A C G T T A C G G C A T A T C G A G C T T C A G T G C A T C A G

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:8
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CCTCCATTGA--
TGWCCTCARNTGACC
 A C G T A C G T A C G T A G T C A G T C A C G T A G T C G T A C C G T A A C G T A C G T A C T G C G T A A C G T A C G T
G C A T T A C G C G T A G T A C A G T C G A C T A G T C T C G A T C A G T C G A C G A T T C A G T G C A G T A C G A T C

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:9
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CCTCCATTGA-
---CCWTTGTY
 A G T C A G T C A C G T A G T C G T A C C G T A A C G T A C G T A C T G C G T A A C G T
A C G T A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CCTCCATTGA--
--NCCATTGTTC
 A G T C A G T C A C G T A G T C G T A C C G T A A C G T A C G T A C T G C G T A A C G T A C G T
A C G T A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C