Information for 23-CACGCGTGCA (Motif 39)

A T G C T G C A A G T C A T C G G T A C A T C G A C G T A C T G T G A C C G T A
Reverse Opposite:
G C A T A C T G A G T C C G T A T A G C C A T G A T G C T C A G A C G T A T C G
p-value:1e-6
log p-value:-1.502e+01
Information Content per bp:1.734
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.81%
Number of Background Sequences with motif20.5
Percentage of Background Sequences with motif0.30%
Average Position of motif in Targets56.4 +/- 21.6bp
Average Position of motif in Background65.3 +/- 22.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hes1/MA1099.1/Jaspar

Match Rank:1
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:CACGCGTGCA
NNCGCGTGNN
 A T G C T G C A A G T C A T C G G T A C A T C G A C G T A C T G T G A C C G T A
C A T G C T G A T G A C C T A G A G T C T C A G G A C T C T A G A T G C A T G C

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:2
Score:0.74
Offset:2
Orientation:forward strand
Alignment:CACGCGTGCA
--TGCGTG--
 A T G C T G C A A G T C A T C G G T A C A T C G A C G T A C T G T G A C C G T A
A C G T A C G T G A C T A C T G A G T C A C T G A C G T A C T G A C G T A C G T

Mlxip/MA0622.1/Jaspar

Match Rank:3
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:CACGCGTGCA
-ACACGTGC-
 A T G C T G C A A G T C A T C G G T A C A T C G A C G T A C T G T G A C C G T A
A C G T G T C A A G T C C G T A A G T C A C T G A C G T A C T G T A G C A C G T

Npas2/MA0626.1/Jaspar

Match Rank:4
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:CACGCGTGCA
NACACGTGCN
 A T G C T G C A A G T C A T C G G T A C A T C G A C G T A C T G T G A C C G T A
A C T G T G C A A G T C C G T A A G T C A C T G A C G T A C T G A T G C G A T C

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:5
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CACGCGTGCA
-GGACGTGC-
 A T G C T G C A A G T C A T C G G T A C A T C G A C G T A C T G T G A C C G T A
A C G T T A C G A C T G T C G A A G T C A C T G A C G T A C T G T A G C A C G T

Arnt/MA0004.1/Jaspar

Match Rank:6
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CACGCGTGCA
--CACGTG--
 A T G C T G C A A G T C A T C G G T A C A T C G A C G T A C T G T G A C C G T A
A C G T A C G T G T A C C T G A A G T C A C T G A C G T A C T G A C G T A C G T

HEY1/MA0823.1/Jaspar

Match Rank:7
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CACGCGTGCA
GACACGTGCC
 A T G C T G C A A G T C A T C G G T A C A T C G A C G T A C T G T G A C C G T A
T A C G T C G A A G T C T C G A A G T C A T C G A G C T C T A G A G T C T G A C

MNT/MA0825.1/Jaspar

Match Rank:8
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CACGCGTGCA
ACCACGTGCC
 A T G C T G C A A G T C A T C G G T A C A T C G A C G T A C T G T G A C C G T A
C T G A T A G C G T A C C G T A A G T C C T A G A C G T A C T G T G A C G A T C

Mitf/MA0620.1/Jaspar

Match Rank:9
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CACGCGTGCA-
-NCACGTGACN
 A T G C T G C A A G T C A T C G G T A C A T C G A C G T A C T G T G A C C G T A A C G T
A C G T A G T C G T A C C G T A A G T C T C A G C A G T A C T G T G C A A G T C G A T C

Id2/MA0617.1/Jaspar

Match Rank:10
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CACGCGTGCA
-TCACGTGC-
 A T G C T G C A A G T C A T C G G T A C A T C G A C G T A C T G T G A C C G T A
A C G T G A C T A G T C C G T A A G T C A C T G A C G T A C T G A G T C A C G T