Information for 22-CTGCTTAGCA (Motif 38)

A G T C G A C T A C T G T A G C G A C T A C G T C G T A A C T G G T A C T C G A
Reverse Opposite:
A G C T C A T G T G A C G C A T T G C A C T G A A T C G T G A C C T G A C T A G
p-value:1e-6
log p-value:-1.540e+01
Information Content per bp:1.536
Number of Target Sequences with motif123.0
Percentage of Target Sequences with motif17.15%
Number of Background Sequences with motif744.0
Percentage of Background Sequences with motif10.80%
Average Position of motif in Targets53.2 +/- 26.3bp
Average Position of motif in Background50.0 +/- 31.1bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CTGCTTAGCA-----
CCGCATAGCAACGGA
 A G T C G A C T A C T G T A G C G A C T A C G T C G T A A C T G G T A C T C G A A C G T A C G T A C G T A C G T A C G T
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

PB0022.1_Gata5_1/Jaspar

Match Rank:2
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CTGCTTAGCA-----
NTNTTCTTATCAGTNTN
 A C G T A C G T A G T C G A C T A C T G T A G C G A C T A C G T C G T A A C T G G T A C T C G A A C G T A C G T A C G T A C G T A C G T
G C T A G C A T G T A C A G C T A G C T A T G C C G A T C G A T C G T A A C G T A G T C C G T A T C A G G A C T G C A T G C A T C G T A

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CTGCTTAGCA--
BTVATTWGCATA
 A G T C G A C T A C T G T A G C G A C T A C G T C G T A A C T G G T A C T C G A A C G T A C G T
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A

PB0055.1_Rfx4_1/Jaspar

Match Rank:4
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CTGCTTAGCA-----
TACCATAGCAACGGT
 A G T C G A C T A C T G T A G C G A C T A C G T C G T A A C T G G T A C T C G A A C G T A C G T A C G T A C G T A C G T
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CTGCTTAGCA--
CTCATTTGCATW
 A G T C G A C T A C T G T A G C G A C T A C G T C G T A A C T G G T A C T C G A A C G T A C G T
A G T C G C A T T G A C G T C A A C G T A G C T C G A T T C A G T G A C G C T A G C A T C G T A

PB0054.1_Rfx3_1/Jaspar

Match Rank:6
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----CTGCTTAGCA---------
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T A C G T A C G T A G T C G A C T A C T G T A G C G A C T A C G T C G T A A C T G G T A C T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----CTGCTTAGCA
CCCCCTGCTGTG--
 A C G T A C G T A C G T A C G T A G T C G A C T A C T G T A G C G A C T A C G T C G T A A C T G G T A C T C G A
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:8
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CTGCTTAGCA---
TGTTKCCTAGCAACM
 A C G T A C G T A G T C G A C T A C T G T A G C G A C T A C G T C G T A A C T G G T A C T C G A A C G T A C G T A C G T
C A G T T C A G A G C T G A C T A C G T A G T C G A T C G A C T C T G A A C T G G A T C C G T A C T G A A G T C G T A C

NFIA/MA0670.1/Jaspar

Match Rank:9
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CTGCTTAGCA--
--NNTTGGCANN
 A G T C G A C T A C T G T A G C G A C T A C G T C G T A A C T G G T A C T C G A A C G T A C G T
A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:10
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CTGCTTAGCA
CCTGCTGAGH-
 A C G T A G T C G A C T A C T G T A G C G A C T A C G T C G T A A C T G G T A C T C G A
A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T