p-value: | 1e-8 |
log p-value: | -1.963e+01 |
Information Content per bp: | 1.692 |
Number of Target Sequences with motif | 15.0 |
Percentage of Target Sequences with motif | 2.09% |
Number of Background Sequences with motif | 19.4 |
Percentage of Background Sequences with motif | 0.28% |
Average Position of motif in Targets | 48.6 +/- 21.3bp |
Average Position of motif in Background | 55.2 +/- 19.3bp |
Strand Bias (log2 ratio + to - strand density) | 0.0 |
Multiplicity (# of sites on avg that occur together) | 1.07 |
Motif File: | file (matrix) reverse opposite |
SVG Files for Logos: | forward logo reverse opposite |
RORA(var.2)/MA0072.1/Jaspar
Match Rank: | 1 |
Score: | 0.63 |
Offset: | -4 |
Orientation: | forward strand |
Alignment: | ----ASTGGGTCAATGC TATAAGTAGGTCAA--- |
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RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer
Match Rank: | 2 |
Score: | 0.63 |
Offset: | -1 |
Orientation: | forward strand |
Alignment: | -ASTGGGTCAATGC AAYTAGGTCA---- |
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Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer
Match Rank: | 3 |
Score: | 0.62 |
Offset: | -7 |
Orientation: | forward strand |
Alignment: | -------ASTGGGTCAATGC GTAGGTCACTGGGTCA---- |
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FOS::JUN/MA0099.2/Jaspar
Match Rank: | 4 |
Score: | 0.60 |
Offset: | 2 |
Orientation: | reverse strand |
Alignment: | ASTGGGTCAATGC --TGAGTCA---- |
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PB0157.1_Rara_2/Jaspar
Match Rank: | 5 |
Score: | 0.60 |
Offset: | -3 |
Orientation: | forward strand |
Alignment: | ---ASTGGGTCAATGC AGAGCGGGGTCAAGTA |
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MF0004.1_Nuclear_Receptor_class/Jaspar
Match Rank: | 6 |
Score: | 0.60 |
Offset: | 3 |
Orientation: | forward strand |
Alignment: | ASTGGGTCAATGC ---AGGTCA---- |
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PB0030.1_Hnf4a_1/Jaspar
Match Rank: | 7 |
Score: | 0.59 |
Offset: | -3 |
Orientation: | forward strand |
Alignment: | ---ASTGGGTCAATGC- CTCCAGGGGTCAATTGA |
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PB0153.1_Nr2f2_2/Jaspar
Match Rank: | 8 |
Score: | 0.58 |
Offset: | -3 |
Orientation: | forward strand |
Alignment: | ---ASTGGGTCAATGC CGCGCCGGGTCACGTA |
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FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer
Match Rank: | 9 |
Score: | 0.56 |
Offset: | 3 |
Orientation: | forward strand |
Alignment: | ASTGGGTCAATGC---- ---AGGTCANTGACCTN |
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PB0057.1_Rxra_1/Jaspar
Match Rank: | 10 |
Score: | 0.56 |
Offset: | -3 |
Orientation: | reverse strand |
Alignment: | ---ASTGGGTCAATGC- NTNNNGGGGTCANGNNN |
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