Information for 22-TGGTCAGAGAGTC (Motif 24)

A C G T A C T G A C T G A C G T A T G C C G T A A C T G C G T A A C T G C G T A A C T G C G A T A G T C
Reverse Opposite:
A C T G G C T A A G T C A C G T A G T C A C G T A G T C A C G T A T C G C G T A G T A C A G T C C G T A
p-value:1e-5
log p-value:-1.318e+01
Information Content per bp:1.935
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.31%
Number of Background Sequences with motif0.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets35.4 +/- 26.4bp
Average Position of motif in Background63.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:1
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--TGGTCAGAGAGTC-
GTAGGTCACTGGGTCA
 A C G T A C G T A C G T A C T G A C T G A C G T A T G C C G T A A C T G C G T A A C T G C G T A A C T G C G A T A G T C A C G T
A T C G A G C T C T G A C T A G A C T G A C G T G T A C G C T A A T G C A C G T C T A G C A T G T A C G C G A T A T G C C G T A

VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer

Match Rank:2
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--TGGTCAGAGAGTC-----
NGAGGTCANNGAGTTCANNN
 A C G T A C G T A C G T A C T G A C T G A C G T A T G C C G T A A C T G C G T A A C T G C G T A A C T G C G A T A G T C A C G T A C G T A C G T A C G T A C G T
C T G A T C A G C T G A C T A G C A T G A C G T A T G C C G T A A T G C G C A T T C A G C T G A A C T G A C G T C A G T A G T C C G T A C A G T C T A G C A T G

ESR2/MA0258.2/Jaspar

Match Rank:3
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TGGTCAGAGAGTC--
AGGTCACCCTGACCT
 A C G T A C T G A C T G A C G T A T G C C G T A A C T G C G T A A C T G C G T A A C T G C G A T A G T C A C G T A C G T
C T G A C A T G C T A G A C G T A T G C C G T A A T G C T G A C T A G C G C A T T C A G G T C A G A T C G A T C G A C T

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:TGGTCAGAGAGTC---
-GGTCANNGTGACCTN
 A C G T A C T G A C T G A C G T A T G C C G T A A C T G C G T A A C T G C G T A A C T G C G A T A G T C A C G T A C G T A C G T
A C G T C A T G C T A G C A G T A G T C C G T A A T G C T A C G T A C G G C A T T C A G G T C A G A T C G T A C G A C T A C G T

RXRA::VDR/MA0074.1/Jaspar

Match Rank:5
Score:0.56
Offset:0
Orientation:forward strand
Alignment:TGGTCAGAGAGTC--
GGGTCAACGAGTTCA
 A C G T A C T G A C T G A C G T A T G C C G T A A C T G C G T A A C T G C G T A A C T G C G A T A G T C A C G T A C G T
C T A G A C T G A C T G A C G T A G T C C T G A G C A T A G T C C T A G C T A G A C T G A C G T C G A T A G T C T C G A

PB0140.1_Irf6_2/Jaspar

Match Rank:6
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:TGGTCAGAGAGTC--
NNNACCGAGAGTNNN
 A C G T A C T G A C T G A C G T A T G C C G T A A C T G C G T A A C T G C G T A A C T G C G A T A G T C A C G T A C G T
A T C G G A C T C A T G G T C A A G T C G A T C C T A G T C G A T A C G G T C A C A T G C G A T T C A G T A C G A C G T

PB0203.1_Zfp691_2/Jaspar

Match Rank:7
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:TGGTCAGAGAGTC-----
-NTNNNAGGAGTCTCNTN
 A C G T A C T G A C T G A C G T A T G C C G T A A C T G C G T A A C T G C G T A A C T G C G A T A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A T C G C A G T A C G T G C T A C T A G C T G A A C T G A C T G C G T A A T C G A G C T G T A C G C A T T G A C T A C G G A C T G T C A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:8
Score:0.54
Offset:0
Orientation:forward strand
Alignment:TGGTCAGAGAGTC
AGGTCA-------
 A C G T A C T G A C T G A C G T A T G C C G T A A C T G C G T A A C T G C G T A A C T G C G A T A G T C
C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Rarg/MA0859.1/Jaspar

Match Rank:9
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-TGGTCAGAGAGTC--
AAGGTCAAAAGGTCAA
 A C G T A C G T A C T G A C T G A C G T A T G C C G T A A C T G C G T A A C T G C G T A A C T G C G A T A G T C A C G T A C G T
T C G A T C G A C T A G A C T G A C G T A G T C T C G A C G T A C T G A T C G A A C T G A C T G A C G T A G T C T C G A G C T A

PB0138.1_Irf4_2/Jaspar

Match Rank:10
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:TGGTCAGAGAGTC--
GNNACCGAGAATNNN
 A C G T A C T G A C T G A C G T A T G C C G T A A C T G C G T A A C T G C G T A A C T G C G A T A G T C A C G T A C G T
A T C G G T A C C T G A G C T A A G T C A G T C C A T G T C G A C A T G G C T A C T G A C G A T T C G A A T G C A G C T