Information for 9-CTGGCCGCCATGG (Motif 13)

A T G C A C G T A C T G A C T G G T A C A G T C A C T G A G T C A G T C C G T A A C G T A C T G A C T G
Reverse Opposite:
A G T C G T A C C G T A A C G T A C T G A C T G A G T C C T A G A C T G G T A C A G T C C G T A A T C G
p-value:1e-10
log p-value:-2.342e+01
Information Content per bp:1.904
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.64%
Number of Background Sequences with motif3.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets34.2 +/- 12.0bp
Average Position of motif in Background39.6 +/- 21.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY2/MA0748.1/Jaspar

Match Rank:1
Score:0.71
Offset:2
Orientation:forward strand
Alignment:CTGGCCGCCATGG
--GTCCGCCATTA
 A T G C A C G T A C T G A C T G G T A C A G T C A C T G A G T C A G T C C G T A A C G T A C T G A C T G
A C G T A C G T C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.65
Offset:2
Orientation:forward strand
Alignment:CTGGCCGCCATGG---
--NGTTGCCATGGCAA
 A T G C A C G T A C T G A C T G G T A C A G T C A C T G A G T C A G T C C G T A A C G T A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

YY1(Zf)/Promoter/Homer

Match Rank:3
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:CTGGCCGCCATGG--
---GCCGCCATCTTG
 A T G C A C G T A C T G A C T G G T A C A G T C A C T G A G T C A G T C C G T A A C G T A C T G A C T G A C G T A C G T
A C G T A C G T A C G T C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CTGGCCGCCATGG---
--GGTTGCCATGGCAA
 A T G C A C G T A C T G A C T G G T A C A G T C A C T G A G T C A G T C C G T A A C G T A C T G A C T G A C G T A C G T A C G T
A C G T A C G T C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:5
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CTGGCCGCCATGG----
--KGTTGCCATGGCAAC
 A T G C A C G T A C T G A C T G G T A C A G T C A C T G A G T C A G T C C G T A A C G T A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C T G C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C

YY1/MA0095.2/Jaspar

Match Rank:6
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:CTGGCCGCCATGG--
---GCNGCCATCTTG
 A T G C A C G T A C T G A C T G G T A C A G T C A C T G A G T C A G T C C G T A A C G T A C T G A C T G A C G T A C G T
A C G T A C G T A C G T C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G

Rfx1/MA0509.1/Jaspar

Match Rank:7
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:CTGGCCGCCATGG----
---GTTGCCATGGNAAC
 A T G C A C G T A C T G A C T G G T A C A G T C A C T G A G T C A G T C C G T A A C G T A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:8
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CTGGCCGCCATGG----
-CGGTTGCCATGGCAAC
 A T G C A C G T A C T G A C T G G T A C A G T C A C T G A G T C A G T C C G T A A C G T A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A G T C A T C G C T A G A G C T G A C T C T A G A G T C A G T C G C T A C A G T T C A G T C A G G A T C C T G A T C G A G A T C

PB0113.1_E2F3_2/Jaspar

Match Rank:9
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CTGGCCGCCATGG--
AGCTCGGCGCCAAAAGC
 A C G T A C G T A T G C A C G T A C T G A C T G G T A C A G T C A C T G A G T C A G T C C G T A A C G T A C T G A C T G A C G T A C G T
G T A C A T C G G A C T C G A T G A T C C T A G A T C G G T A C C A T G T A G C G A T C C G T A G T C A C T G A T G C A A T C G A T G C

PB0112.1_E2F2_2/Jaspar

Match Rank:10
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CTGGCCGCCATGG--
CCTTCGGCGCCAAAAGG
 A C G T A C G T A T G C A C G T A C T G A C T G G T A C A G T C A C T G A G T C A G T C C G T A A C G T A C T G A C T G A C G T A C G T
G A T C T A C G A G C T C G A T G A T C C T A G A T C G T G A C C A T G T A G C G A T C C T G A G T C A C T G A T C G A A C T G A T C G