Information for 10-CAGAGTGCAT (Motif 9)

T A G C G T C A T A C G T C G A T A C G C A G T T C A G T G A C G T C A A G C T
Reverse Opposite:
T C G A C A G T A C T G A G T C G T C A A T G C A G C T A T G C C A G T A T C G
p-value:1e-11
log p-value:-2.613e+01
Information Content per bp:1.534
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif2.97%
Number of Background Sequences with motif220.8
Percentage of Background Sequences with motif0.48%
Average Position of motif in Targets61.5 +/- 25.5bp
Average Position of motif in Background47.1 +/- 32.5bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:1
Score:0.65
Offset:-7
Orientation:forward strand
Alignment:-------CAGAGTGCAT
CANAGNNCAAAGTCCA-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C G T C A T A C G T C G A T A C G C A G T T C A G T G A C G T C A A G C T
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T

HNF4G/MA0484.1/Jaspar

Match Rank:2
Score:0.63
Offset:-6
Orientation:forward strand
Alignment:------CAGAGTGCAT
AGAGTCCAAAGTCCA-
 A C G T A C G T A C G T A C G T A C G T A C G T T A G C G T C A T A C G T C G A T A C G C A G T T C A G T G A C G T C A A G C T
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A A C G T

ZNF143/MA0088.2/Jaspar

Match Rank:3
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----CAGAGTGCAT--
TACCCACAATGCATTG
 A C G T A C G T A C G T A C G T T A G C G T C A T A C G T C G A T A C G C A G T T C A G T G A C G T C A A G C T A C G T A C G T
A G C T C G T A G T A C G T A C A G T C C T G A A G T C T C G A C T G A C G A T T C A G A G T C G T C A G A C T G A C T C T A G

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CAGAGTGCAT
CAAAGGTCAG
 T A G C G T C A T A C G T C G A T A C G C A G T T C A G T G A C G T C A A G C T
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:5
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CAGAGTGCAT
TTRAGTGSYK
 T A G C G T C A T A C G T C G A T A C G C A G T T C A G T G A C G T C A A G C T
A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:6
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CAGAGTGCAT
TTAAGTGCTT
 T A G C G T C A T A C G T C G A T A C G C A G T T C A G T G A C G T C A A G C T
A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CAGAGTGCAT
GCCTCAGGGCAT
 A C G T A C G T T A G C G T C A T A C G T C G A T A C G C A G T T C A G T G A C G T C A A G C T
A T C G A G T C A G T C A G C T A T G C C T G A C T A G A C T G A T C G G T A C G C T A C G A T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:8
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CAGAGTGCAT
CTTGAGTGGCT
 A C G T T A G C G T C A T A C G T C G A T A C G C A G T T C A G T G A C G T C A A G C T
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:9
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CAGAGTGCAT-----
TTCNAAGTACTTNNNNN
 A C G T A C G T T A G C G T C A T A C G T C G A T A C G C A G T T C A G T G A C G T C A A G C T A C G T A C G T A C G T A C G T A C G T
C A G T A C G T A G T C T G A C C T G A C T G A C A T G A G C T T C G A G T A C G A C T G A C T A T C G T A C G G C T A C A T G A G C T

PB0099.1_Zfp691_1/Jaspar

Match Rank:10
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CAGAGTGCAT-----
CGAACAGTGCTCACTAT
 A C G T A C G T T A G C G T C A T A C G T C G A T A C G C A G T T C A G T G A C G T C A A G C T A C G T A C G T A C G T A C G T A C G T
A G T C C A T G G C T A T C G A G A T C T C G A A C T G C G A T C T A G G T A C A G C T A G T C T G C A A G T C G C A T C T G A C G A T