Information for 3-AAGAGGCTATAAA (Motif 7)

C G T A C G T A A C T G C G T A A C T G T A C G A G T C G C A T C G T A A C G T C G T A C T G A C G T A
Reverse Opposite:
A C G T A G C T C G A T C G T A G A C T C G T A C T A G A G T C A G T C A C G T T A G C A C G T A C G T
p-value:1e-13
log p-value:-3.063e+01
Information Content per bp:1.825
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.48%
Number of Background Sequences with motif15.9
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets60.3 +/- 22.9bp
Average Position of motif in Background54.4 +/- 23.7bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0012.1_Cdx1/Jaspar

Match Rank:1
Score:0.63
Offset:1
Orientation:forward strand
Alignment:AAGAGGCTATAAA----
-TAAGGTAATAAAATTA
 C G T A C G T A A C T G C G T A A C T G T A C G A G T C G C A T C G T A A C G T C G T A C T G A C G T A A C G T A C G T A C G T A C G T
A C G T C G A T C T G A T G C A C T A G T C A G G A C T G T C A C T G A C G A T G C T A C G T A G C T A G C T A A G C T C A G T G C T A

PH0013.1_Cdx2/Jaspar

Match Rank:2
Score:0.62
Offset:1
Orientation:forward strand
Alignment:AAGAGGCTATAAA----
-AAAGGTAATAAAATTT
 C G T A C G T A A C T G C G T A A C T G T A C G A G T C G C A T C G T A A C G T C G T A C T G A C G T A A C G T A C G T A C G T A C G T
A C G T C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:3
Score:0.60
Offset:4
Orientation:forward strand
Alignment:AAGAGGCTATAAA-
----NGCAATTAAA
 C G T A C G T A A C T G C G T A A C T G T A C G A G T C G C A T C G T A A C G T C G T A C T G A C G T A A C G T
A C G T A C G T A C G T A C G T T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A

Rhox11/MA0629.1/Jaspar

Match Rank:4
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AAGAGGCTATAAA----
AAGACGCTGTAAAGCGA
 C G T A C G T A A C T G C G T A A C T G T A C G A G T C G C A T C G T A A C G T C G T A C T G A C G T A A C G T A C G T A C G T A C G T
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

PH0157.1_Rhox11_1/Jaspar

Match Rank:5
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AAGAGGCTATAAA----
AAGACGCTGTAAAGCGA
 C G T A C G T A A C T G C G T A A C T G T A C G A G T C G C A T C G T A A C G T C G T A C T G A C G T A A C G T A C G T A C G T A C G T
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

PH0158.1_Rhox11_2/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AAGAGGCTATAAA----
AGGACGCTGTAAAGGGA
 C G T A C G T A A C T G C G T A A C T G T A C G A G T C G C A T C G T A A C G T C G T A C T G A C G T A A C G T A C G T A C G T A C G T
C G T A T C A G C A T G G T C A G A T C C T A G T A G C C A G T C T A G G A C T G C T A C G T A G C T A C T A G T A C G T C A G G C T A

CDX2/MA0465.1/Jaspar

Match Rank:7
Score:0.59
Offset:3
Orientation:forward strand
Alignment:AAGAGGCTATAAA-
---AAGCCATAAAA
 C G T A C G T A A C T G C G T A A C T G T A C G A G T C G C A T C G T A A C G T C G T A C T G A C G T A A C G T
A C G T A C G T A C G T T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:8
Score:0.58
Offset:4
Orientation:forward strand
Alignment:AAGAGGCTATAAA---
----NGYCATAAAWCH
 C G T A C G T A A C T G C G T A A C T G T A C G A G T C G C A T C G T A A C G T C G T A C T G A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

PH0073.1_Hoxc9/Jaspar

Match Rank:9
Score:0.58
Offset:1
Orientation:forward strand
Alignment:AAGAGGCTATAAA----
-GGAGGTCATTAATTAT
 C G T A C G T A A C T G C G T A A C T G T A C G A G T C G C A T C G T A A C G T C G T A C T G A C G T A A C G T A C G T A C G T A C G T
A C G T T C A G C A T G T C G A C T A G T C A G G A C T G T A C C T G A G C A T G C A T C G T A G C T A G A C T G A C T C G T A A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:10
Score:0.58
Offset:4
Orientation:forward strand
Alignment:AAGAGGCTATAAA--
----GGTAATAAAAA
 C G T A C G T A A C T G C G T A A C T G T A C G A G T C G C A T C G T A A C G T C G T A C T G A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A