Information for 3-TCWATAAAWD (Motif 3)

C A G T A G T C G C A T C T G A A C G T G T C A C G T A C G T A C G A T C T A G
Reverse Opposite:
G A T C G C T A A C G T A C G T A C G T G T C A A G C T C G T A A C T G G T C A
p-value:1e-16
log p-value:-3.712e+01
Information Content per bp:1.756
Number of Target Sequences with motif47.0
Percentage of Target Sequences with motif6.94%
Number of Background Sequences with motif733.9
Percentage of Background Sequences with motif1.57%
Average Position of motif in Targets56.3 +/- 28.4bp
Average Position of motif in Background49.3 +/- 29.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0078.1_Hoxd13/Jaspar

Match Rank:1
Score:0.83
Offset:-3
Orientation:forward strand
Alignment:---TCWATAAAWD---
CTACCAATAAAATTCT
 A C G T A C G T A C G T C A G T A G T C G C A T C T G A A C G T G T C A C G T A C G T A C G A T C T A G A C G T A C G T A C G T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

CDX1/MA0878.1/Jaspar

Match Rank:2
Score:0.81
Offset:0
Orientation:forward strand
Alignment:TCWATAAAWD
GCAATAAAA-
 C A G T A G T C G C A T C T G A A C G T G T C A C G T A C G T A C G A T C T A G
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:3
Score:0.81
Offset:-1
Orientation:forward strand
Alignment:-TCWATAAAWD-
NGYCATAAAWCH
 A C G T C A G T A G T C G C A T C T G A A C G T G T C A C G T A C G T A C G A T C T A G A C G T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

HOXB13/MA0901.1/Jaspar

Match Rank:4
Score:0.80
Offset:0
Orientation:forward strand
Alignment:TCWATAAAWD
CCAATAAAAC
 C A G T A G T C G C A T C T G A A C G T G T C A C G T A C G T A C G A T C T A G
T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C

HOXA13/MA0650.1/Jaspar

Match Rank:5
Score:0.80
Offset:0
Orientation:forward strand
Alignment:TCWATAAAWD
CCAATAAAAA
 C A G T A G T C G C A T C T G A A C G T G T C A C G T A C G T A C G A T C T A G
T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A

CDX2/MA0465.1/Jaspar

Match Rank:6
Score:0.79
Offset:-2
Orientation:forward strand
Alignment:--TCWATAAAWD
AAGCCATAAAA-
 A C G T A C G T C A G T A G T C G C A T C T G A A C G T G T C A C G T A C G T A C G A T C T A G
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T

POL012.1_TATA-Box/Jaspar

Match Rank:7
Score:0.79
Offset:1
Orientation:forward strand
Alignment:TCWATAAAWD------
-GTATAAAAGGCGGGG
 C A G T A G T C G C A T C T G A A C G T G T C A C G T A C G T A C G A T C T A G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TBP/MA0108.2/Jaspar

Match Rank:8
Score:0.79
Offset:1
Orientation:forward strand
Alignment:TCWATAAAWD------
-GTATAAAAGGCGGGG
 C A G T A G T C G C A T C T G A A C G T G T C A C G T A C G T A C G A T C T A G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

HOXD13/MA0909.1/Jaspar

Match Rank:9
Score:0.78
Offset:0
Orientation:forward strand
Alignment:TCWATAAAWD
CCAATAAAAA
 C A G T A G T C G C A T C T G A A C G T G T C A C G T A C G T A C G A T C T A G
A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-TCWATAAAWD
NCYAATAAAA-
 A C G T C A G T A G T C G C A T C T G A A C G T G T C A C G T A C G T A C G A T C T A G
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T