Information for 14-ACGGGACAGA (Motif 29)

C G T A A G T C A C T G A C T G A T C G C T G A A T G C G T C A A T C G C T G A
Reverse Opposite:
A G C T A T G C C A G T A T C G A G C T A T G C A G T C G T A C T C A G C G A T
p-value:1e-8
log p-value:-1.923e+01
Information Content per bp:1.839
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.77%
Number of Background Sequences with motif81.7
Percentage of Background Sequences with motif0.17%
Average Position of motif in Targets46.2 +/- 21.0bp
Average Position of motif in Background53.3 +/- 26.5bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-ACGGGACAGA
CCAGGAACAG-
 A C G T C G T A A G T C A C T G A C T G A T C G C T G A A T G C G T C A A T C G C T G A
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T

Arntl/MA0603.1/Jaspar

Match Rank:2
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--ACGGGACAGA
NCACGTGACN--
 A C G T A C G T C G T A A G T C A C T G A C T G A T C G C T G A A T G C G T C A A T C G C T G A
C T A G G T A C C T G A A G T C T C A G C G A T A C T G G T C A A G T C G T A C A C G T A C G T

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.58
Offset:1
Orientation:forward strand
Alignment:ACGGGACAGA-
-TGGAACAGMA
 C G T A A G T C A C T G A C T G A T C G C T G A A T G C G T C A A T C G C T G A A C G T
A C G T C A G T A C T G T C A G T G C A G C T A A T G C T C G A A T C G G T C A T G C A

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.57
Offset:0
Orientation:forward strand
Alignment:ACGGGACAGA--
AGGTGHCAGACA
 C G T A A G T C A C T G A C T G A T C G C T G A A T G C G T C A A T C G C T G A A C G T A C G T
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:5
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:ACGGGACAGA---
AGGTGNCAGACAG
 C G T A A G T C A C T G A C T G A T C G C T G A A T G C G T C A A T C G C T G A A C G T A C G T A C G T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

BHLHE41/MA0636.1/Jaspar

Match Rank:6
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---ACGGGACAGA
GTCACGTGAC---
 A C G T A C G T A C G T C G T A A G T C A C T G A C T G A T C G C T G A A T G C G T C A A T C G C T G A
T C A G C A G T T A G C T C G A A G T C T C A G C G A T T A C G G T C A A G T C A C G T A C G T A C G T

POL011.1_XCPE1/Jaspar

Match Rank:7
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--ACGGGACAGA
GGGCGGGACC--
 A C G T A C G T C G T A A G T C A C T G A C T G A T C G C T G A A T G C G T C A A T C G C T G A
A C T G A T C G A C T G A G T C A C T G A C T G C T A G C G T A A T G C G T A C A C G T A C G T

E2F4/MA0470.1/Jaspar

Match Rank:8
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--ACGGGACAGA
GGGCGGGAAGG-
 A C G T A C G T C G T A A G T C A C T G A C T G A T C G C T G A A T G C G T C A A T C G C T G A
A C T G T A C G A T C G A G T C A C T G T A C G T A C G C T G A C T G A T C A G T C A G A C G T

PB0147.1_Max_2/Jaspar

Match Rank:9
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----ACGGGACAGA
GTGCCACGCGACTG-
 A C G T A C G T A C G T A C G T A C G T C G T A A G T C A C T G A C T G A T C G C T G A A T G C G T C A A T C G C T G A
A C T G A G C T A C T G G A T C A G T C C G T A A G T C T C A G G A T C A C T G T C G A T G A C C A G T C A T G A C G T

TFE3/MA0831.1/Jaspar

Match Rank:10
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---ACGGGACAGA
ATCACGTGAC---
 A C G T A C G T A C G T C G T A A G T C A C T G A C T G A T C G C T G A A T G C G T C A A T C G C T G A
T C G A A G C T A T G C G C T A A G T C T C A G G C A T A C T G T G C A G A T C A C G T A C G T A C G T