Information for 6-AGDAHATGVAGDTCAG (Motif 9)

C T G A A C T G C A T G C G T A G C A T C G T A A C G T A C T G T G A C C G T A A T C G C A G T A C G T A G T C C G T A A C T G
Reverse Opposite:
A G T C A C G T A C T G C G T A G C T A A T G C A C G T A C T G A G T C C G T A A C G T C G T A A C G T G T A C G T A C A G C T
p-value:1e-13
log p-value:-3.157e+01
Information Content per bp:1.792
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets61.8 +/- 21.6bp
Average Position of motif in Background32.6 +/- 9.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORA/MA0071.1/Jaspar

Match Rank:1
Score:0.63
Offset:5
Orientation:forward strand
Alignment:AGDAHATGVAGDTCAG
-----ATCAAGGTCA-
 C T G A A C T G C A T G C G T A G C A T C G T A A C G T A C T G T G A C C G T A A T C G C A G T A C G T A G T C C G T A A C T G
A C G T A C G T A C G T A C G T A C G T C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:2
Score:0.61
Offset:2
Orientation:forward strand
Alignment:AGDAHATGVAGDTCAG
--TATAAGTAGGTCAA
 C T G A A C T G C A T G C G T A G C A T C G T A A C G T A C T G T G A C C G T A A T C G C A G T A C G T A G T C C G T A A C T G
A C G T A C G T C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A

POU2F2/MA0507.1/Jaspar

Match Rank:3
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:AGDAHATGVAGDTCAG
---ATATGCAAATNNN
 C T G A A C T G C A T G C G T A G C A T C G T A A C G T A C T G T G A C C G T A A T C G C A G T A C G T A G T C C G T A A C T G
A C G T A C G T A C G T C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

POU1F1/MA0784.1/Jaspar

Match Rank:4
Score:0.58
Offset:2
Orientation:forward strand
Alignment:AGDAHATGVAGDTCAG
--AATATGCAAATTAG
 C T G A A C T G C A T G C G T A G C A T C G T A A C G T A C T G T G A C C G T A A T C G C A G T A C G T A G T C C G T A A C T G
A C G T A C G T C G T A C G T A C G A T C T G A G A C T C A T G A G T C G C T A C G T A G T C A C G A T A C G T C G T A C T A G

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:5
Score:0.57
Offset:3
Orientation:forward strand
Alignment:AGDAHATGVAGDTCAG
---ATATGCAAAT---
 C T G A A C T G C A T G C G T A G C A T C G T A A C G T A C T G T G A C C G T A A T C G C A G T A C G T A G T C C G T A A C T G
A C G T A C G T A C G T G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:6
Score:0.57
Offset:4
Orientation:forward strand
Alignment:AGDAHATGVAGDTCAG
----WATGCAAATGAG
 C T G A A C T G C A T G C G T A G C A T C G T A A C G T A C T G T G A C C G T A A T C G C A G T A C G T A G T C C G T A A C T G
A C G T A C G T A C G T A C G T G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:7
Score:0.56
Offset:5
Orientation:forward strand
Alignment:AGDAHATGVAGDTCAG
-----AAYTAGGTCA-
 C T G A A C T G C A T G C G T A G C A T C G T A A C G T A C T G T G A C C G T A A T C G C A G T A C G T A G T C C G T A A C T G
A C G T A C G T A C G T A C G T A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T

Vdr/MA0693.1/Jaspar

Match Rank:8
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-AGDAHATGVAGDTCAG
GAGTTCATTGAGTTCA-
 A C G T C T G A A C T G C A T G C G T A G C A T C G T A A C G T A C T G T G A C C G T A A T C G C A G T A C G T A G T C C G T A A C T G
T C A G T C G A C A T G A C G T A C G T A G T C C T G A G A C T G A C T T C A G T C G A C T A G A C G T A C G T A G T C C T G A A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:AGDAHATGVAGDTCAG
------TCAAGGTCAN
 C T G A A C T G C A T G C G T A G C A T C G T A A C G T A C T G T G A C C G T A A T C G C A G T A C G T A G T C C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C

Esrrg/MA0643.1/Jaspar

Match Rank:10
Score:0.55
Offset:6
Orientation:forward strand
Alignment:AGDAHATGVAGDTCAG
------TCAAGGTCAT
 C T G A A C T G C A T G C G T A G C A T C G T A A C G T A C T G T G A C C G T A A T C G C A G T A C G T A G T C C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T G A C T T A G C C T G A T C G A C A T G A T C G C A G T A G T C C T G A G C A T