Information for 3-AAATATTGACTKAACW (Motif 4)

C G T A C G T A C G T A G C A T C G T A A C G T A C G T A C T G G T C A A G T C C G A T C A G T C G T A C G T A G T A C C G T A
Reverse Opposite:
C G A T A C T G A C G T C G A T G T C A C G T A C T A G A C G T G T A C C G T A C G T A A C G T C G T A A C G T A C G T A C G T
p-value:1e-16
log p-value:-3.840e+01
Information Content per bp:1.803
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.08%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets58.6 +/- 18.2bp
Average Position of motif in Background27.9 +/- 11.8bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid5a/MA0602.1/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-AAATATTGACTKAACW
CTAATATTGCTAAA---
 A C G T C G T A C G T A C G T A G C A T C G T A A C G T A C G T A C T G G T C A A G T C C G A T C A G T C G T A C G T A G T A C C G T A
T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A A C G T A C G T A C G T

PB0002.1_Arid5a_1/Jaspar

Match Rank:2
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-AAATATTGACTKAACW
CTAATATTGCTAAA---
 A C G T C G T A C G T A C G T A G C A T C G T A A C G T A C G T A C T G G T C A A G T C C G A T C A G T C G T A C G T A G T A C C G T A
T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A A C G T A C G T A C G T

FOXB1/MA0845.1/Jaspar

Match Rank:3
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:AAATATTGACTKAACW
--ATATTTACATA---
 C G T A C G T A C G T A G C A T C G T A A C G T A C G T A C T G G T C A A G T C C G A T C A G T C G T A C G T A G T A C C G T A
A C G T A C G T C G T A G A C T T C G A C G A T C G A T A C G T C T G A G A T C G C T A G A C T C G T A A C G T A C G T A C G T

FOXC1/MA0032.2/Jaspar

Match Rank:4
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:AAATATTGACTKAACW
--ATATTTACATA---
 C G T A C G T A C G T A G C A T C G T A A C G T A C G T A C T G G T C A A G T C C G A T C A G T C G T A C G T A G T A C C G T A
A C G T A C G T C G T A G A C T T C G A G A C T C A G T C A G T C G T A A G T C G C T A G A C T C G T A A C G T A C G T A C G T

PB0146.1_Mafk_2/Jaspar

Match Rank:5
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--AAATATTGACTKAACW
GAAAAAATTGCAAGG---
 A C G T A C G T C G T A C G T A C G T A G C A T C G T A A C G T A C G T A C T G G T C A A G T C C G A T C A G T C G T A C G T A G T A C C G T A
T C A G G T C A T C G A C T G A C T G A G C T A G C T A C A G T A G C T C A T G A G T C T G C A G T C A A T C G T C A G A C G T A C G T A C G T

MF0010.1_Homeobox_class/Jaspar

Match Rank:6
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:AAATATTGACTKAACW
AATTATT---------
 C G T A C G T A C G T A G C A T C G T A A C G T A C G T A C T G G T C A A G T C C G A T C A G T C G T A C G T A G T A C C G T A
G C T A G C T A G A C T G A C T C G T A G C A T C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:7
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:AAATATTGACTKAACW
----ATTGATTYND--
 C G T A C G T A C G T A G C A T C G T A A C G T A C G T A C T G G T C A A G T C C G A T C A G T C G T A C G T A G T A C C G T A
A C G T A C G T A C G T A C G T C G T A A C G T A G C T A T C G G T C A A G C T G A C T A G C T T G A C C G A T A C G T A C G T

PB0175.1_Sox4_2/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--AAATATTGACTKAACW
GGAAAAATTGTTAGGAA-
 A C G T A C G T C G T A C G T A C G T A G C A T C G T A A C G T A C G T A C T G G T C A A G T C C G A T C A G T C G T A C G T A G T A C C G T A
T A C G T C A G G C T A C G T A C T G A C T G A C T G A A G C T C G A T T C A G C G A T G A C T C T G A T A C G C T A G C T G A C T G A A C G T

HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer

Match Rank:9
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--AAATATTGACTKAACW
TTAATNATTAAC------
 A C G T A C G T C G T A C G T A C G T A G C A T C G T A A C G T A C G T A C T G G T C A A G T C C G A T C A G T C G T A C G T A G T A C C G T A
A C G T G A C T T C G A G T C A G C A T T A G C C G T A C A G T A G C T C G T A T G C A G A T C A C G T A C G T A C G T A C G T A C G T A C G T

Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer

Match Rank:10
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----AAATATTGACTKAACW
GGTTAAACATTAA-------
 A C G T A C G T A C G T A C G T C G T A C G T A C G T A G C A T C G T A A C G T A C G T A C T G G T C A A G T C C G A T C A G T C G T A C G T A G T A C C G T A
C T A G C T A G G C A T C G A T C T G A G T C A G C T A A T G C C G T A C A G T G A C T C G T A T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T