Information for 20-AGGCTAGCTTGSCTTT (Motif 21)

G T C A C A T G A C T G A G T C G A C T C T G A C T A G G T A C A G C T C G A T A C T G T A C G A G T C A G C T C G A T A C G T
Reverse Opposite:
G T C A G C T A C T G A T A C G A T G C G T A C C G T A C T G A A C T G A G T C G A C T C G T A A C T G A G T C G A T C A C G T
p-value:1e-10
log p-value:-2.329e+01
Information Content per bp:1.718
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif4.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets55.1 +/- 24.8bp
Average Position of motif in Background46.4 +/- 33.9bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e3/MA0164.1/Jaspar

Match Rank:1
Score:0.56
Offset:3
Orientation:forward strand
Alignment:AGGCTAGCTTGSCTTT
---CAAGCTT------
 G T C A C A T G A C T G A G T C G A C T C T G A C T A G G T A C A G C T C G A T A C T G T A C G A G T C A G C T C G A T A C G T
A C G T A C G T A C G T G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-AGGCTAGCTTGSCTTT
AAGGCAAGTGT------
 A C G T G T C A C A T G A C T G A G T C G A C T C T G A C T A G G T A C A G C T C G A T A C T G T A C G A G T C A G C T C G A T A C G T
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T A C G T A C G T A C G T A C G T

POL006.1_BREu/Jaspar

Match Rank:3
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:AGGCTAGCTTGSCTTT
-GGCGCGCT-------
 G T C A C A T G A C T G A G T C G A C T C T G A C T A G G T A C A G C T C G A T A C T G T A C G A G T C A G C T C G A T A C G T
A C G T C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:4
Score:0.53
Offset:1
Orientation:forward strand
Alignment:AGGCTAGCTTGSCTTT
-GTCATGCHTGRCTGS
 G T C A C A T G A C T G A G T C G A C T C T G A C T A G G T A C A G C T C G A T A C T G T A C G A G T C A G C T C G A T A C G T
A C G T A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

POL010.1_DCE_S_III/Jaspar

Match Rank:5
Score:0.49
Offset:5
Orientation:reverse strand
Alignment:AGGCTAGCTTGSCTTT
-----NGCTN------
 G T C A C A T G A C T G A G T C G A C T C T G A C T A G G T A C A G C T C G A T A C T G T A C G A G T C A G C T C G A T A C G T
A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.49
Offset:0
Orientation:reverse strand
Alignment:AGGCTAGCTTGSCTTT
NGTCACGCTTGGCTGC
 G T C A C A T G A C T G A G T C G A C T C T G A C T A G G T A C A G C T C G A T A C T G T A C G A G T C A G C T C G A T A C G T
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C

PAX5/MA0014.2/Jaspar

Match Rank:7
Score:0.47
Offset:1
Orientation:reverse strand
Alignment:AGGCTAGCTTGSCTTT----
-GTCACGCTTGGCTGCNCNN
 G T C A C A T G A C T G A G T C G A C T C T G A C T A G G T A C A G C T C G A T A C T G T A C G A G T C A G C T C G A T A C G T A C G T A C G T A C G T A C G T
A C G T C A T G G A C T A G T C G T C A G A T C T C A G T A G C G A C T A G C T A T C G T C A G A T G C G A C T C T A G T G A C G A T C A G T C G C A T A G T C

PB0029.1_Hic1_1/Jaspar

Match Rank:8
Score:0.46
Offset:-3
Orientation:reverse strand
Alignment:---AGGCTAGCTTGSCTTT
NGTAGGTTGGCATNNN---
 A C G T A C G T A C G T G T C A C A T G A C T G A G T C G A C T C T G A C T A G G T A C A G C T C G A T A C T G T A C G A G T C A G C T C G A T A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T A C G T A C G T A C G T

ESR2/MA0258.2/Jaspar

Match Rank:9
Score:0.44
Offset:0
Orientation:forward strand
Alignment:AGGCTAGCTTGSCTTT
AGGTCACCCTGACCT-
 G T C A C A T G A C T G A G T C G A C T C T G A C T A G G T A C A G C T C G A T A C T G T A C G A G T C A G C T C G A T A C G T
C T G A C A T G C T A G A C G T A T G C C G T A A T G C T G A C T A G C G C A T T C A G G T C A G A T C G A T C G A C T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:10
Score:0.44
Offset:-1
Orientation:forward strand
Alignment:-AGGCTAGCTTGSCTTT
TWGTCTGV---------
 A C G T G T C A C A T G A C T G A G T C G A C T C T G A C T A G G T A C A G C T C G A T A C T G T A C G A G T C A G C T C G A T A C G T
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T